Gallery

PyMOLWiki Gallery

Cool PyMOL-generated Images and their Scripts

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Grid Mode	What To Type
Description This image shows Grid Mode in action. See Also Fetch Set grid_mode	fetch 1cll 1sra 1ggz 5pnt 1rlw 1cdy; set grid_mode

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Cool Perspective	What To Type
Description This image shows a perspective through Field_Of_View. See Also Load Ray Zoom Set	load prot.pdb; zoom i. 46-49 and n. CA set field_of_view, 60 ray

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Representing a binding pocket	What To Type
[[Image:{{{image}}}|200px]] Description This image shows a nice way to show binding surfaces See Also extract delete show set orient surface_carve_cutoff surface_carve_selection surface_carve_normal_cutoff surface_color surface_type	load $TUT/1hpv.pdb, tmp extract lig, organic extract prot, polymer delete tmp set surface_carve_cutoff, 4.5 set surface_carve_selection, lig set surface_carve_normal_cutoff, -0.1 show surface, prot within 8 of lig set two_sided_lighting set transparency, 0.5 show sticks, lig orient lig set surface_color, white set surface_type, 2 # mesh unset ray_shadows