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Revision as of 20:32, 15 July 2022 by JarrettJohnson (talk | contribs) (PyMOL 2022-2023 Fellowship Date change)
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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellows announced for 2022-2023
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Edit Keys

===EDITING KEYS ===
These are defaults, which can be redefined.  Note that while
entering text on the command line, some of these control keys take on
text editing functions instead (CTRL - A, E, and K, and DELETE), so
you should clear the command line before trying to edit atoms.

ATOM REPLACEMENT

  CTRL-C    Replace picked atom with carbon   (C)
  CTRL-N    Replace picked atom with nitrogen (N)
  CTRL-O    Replace picked atom with oxygen   (O)
  CTRL-S    Replace picked atom with sulpher  (S)
  CTRL-G    Replace picked atom with hydrogen (H)
  CTRL-F    Replace picked atom with fluorene (F)
  CTRL-L    Replace picked atom with chlorine (Cl)
  CTRL-B    Replace picked atom with bromine  (Br)
  CTRL-I    Replace picked atom with iodine   (I)

ATOM MODIFICATION

  CTRL-J    Set charge on picked atom to -1
  CTRL-K    Set charge on picked atom to +1
  CTRL-D    Remove atom or bond (DELETE works too).
  CTRL-Y    Add a hydrogen to the current atom
  CTRL-R    Adjust hydrogens on atom/bond to match  ..→
A Random PyMOL-generated Cover. See Covers.