CCTBX
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This page describes how to use the Computational Crystallography Toolbox (cctbx) with PyMOL.
cctbx and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.
Incentive PyMOL
Create a conda environment with schrodinger::pymol and conda-forge::cctbx-base.
On Linux and Windows:
conda create -n env1 schrodinger::pymol conda-forge::cctbx-base
On macOS, you also need schrodinger::tk and XQuartz:
conda create -n env1 schrodinger::pymol conda-forge::cctbx-base schrodinger::tk
Open-Source PyMOL
See CCTBX-fedora32.