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Did you know...
load_aln loads a pairwise sequence alignment file as an alignment object into PyMOL.
Installation
load_aln is available from the psico package and requires biopython.
All dependencies are available from Anaconda Cloud:
conda install -c schrodinger pymol
conda install -c schrodinger pymol-psico
conda install biopython
Usage
load_aln filename [, object [, mobile [, target
[, mobile_id [, target_id [, format [, transform ]]]]]]]
Arguments
- filename = str: alignment file
- object = str: name of the object {default: filename prefix}
- mobile, target = str: atom selections {default: ids from alignment file}
- mobile_id, target_id = str: ids from alignment file {default: first two}
- format = str: file format, see http://biopython.org/wiki/AlignIO {default: guess from first line in file}
- transform = 0/1: superpose mobile on target (using fit) {default: 0}
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 A Random PyMOL-generated Cover. See Covers.
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