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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
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Gallery | Covers PyMOL Cheat Sheet (PDF) GoogleSearch
News & Updates
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014.
Official Release PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
New Script cgo_arrow draws an arrow between two picked atoms.
Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL.
Older News See Older News.
Did you know...

Bnitools

Type PyMOL Plugin
Download plugins/bnitools.py
Author(s) Georg Steinkellner
License BSD
This code has been put under version control in the project Pymol-script-repo
Screenshot of the BNI Tools plugin menu

BNI Tools is a plug in for PyMOL which adds additional functionalities and presets to the PyMOL GUI.

Installation

Install it using the 'Install Plugin' menu within PyMOL:
PyMOL > Plugin > Plugin Manager

Example images created using BNI Tools

Create a box around a selection Load and show DelPhi or other maps Create a box Exclude parts of surface Create Plane Create a main chain track

BNI Tools dropdown menu (Plugin > BNI Tools > ...)

    [+]Load Files->
     [-]modeller files
       * load multiple modeller files and sort by 
       * objective function energy 
       * and add  ..→
A Random PyMOL-generated Cover. See Covers.