Format bonds

Type	Python Module
Download	format_bonds.py
Author(s)	Andreas Warnecke
License	BSD-2-Clause
This code has been put under version control in the project Pymol-script-repo

The script format_bonds will automatically format bonds in amino acids.

Usage

format_bonds [ selection [, bonds ]]

Examples

• 

  format_bonds bonds=1

• 

  format_bonds bonds=2

• 

  format_bonds

import format_bonds

frag PHE
format_bonds

format_bonds bonds=2

Notes

• Remember to correctly configure plugin import (see: Git intro)
• format_bonds will introduce delocalized bonds by default or when bonds is larger than 2.
  
• Setting bonds=1 will simply disable valence display (globally!)
• The selection argument is 'all' by default and can be used to restrict editing to selected residues.
  
• Note that format_bonds will also format acidic residues, the C-terminus, arginine and nitro groups.
• Tip: press the TAB key after entering format_bonds to get argument suggestions

SEE ALSO

Git intro, Valence, Modeling and Editing Structures