User contributions for Jaredsampson
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14 June 2012
- 22:5322:53, 14 June 2012 diff hist +786 Elbow angle Added Implementation section
- 22:1322:13, 14 June 2012 diff hist 0 m Elbow angle →Syntax: capitalized PyMOL
- 22:1322:13, 14 June 2012 diff hist +171 Elbow angle →Syntax: added description of object argument
- 22:1022:10, 14 June 2012 diff hist 0 m Elbow angle →Examples: fixed capitalization of Abnum to match Dr. Martin's page
- 22:0922:09, 14 June 2012 diff hist +232 Elbow angle →Examples: changed order of image and script to make the page look nicer. clarified explanation of arguments and importance of correct numbering and chain ids.
- 16:3316:33, 14 June 2012 diff hist +448 Elbow angle added syntax section
- 16:2516:25, 14 June 2012 diff hist +1,404 Elbow angle →Examples: added contents of example script
- 16:2216:22, 14 June 2012 diff hist +443 Elbow angle →Examples: added more details to first example, and better explanation for Pymol-script-repo example
8 June 2012
- 14:1714:17, 8 June 2012 diff hist +814 N Transformations Basic description of script added. Explained basic import and started a list of scripts using transformations.py. current
- 13:5413:54, 8 June 2012 diff hist −42 Elbow angle →Examples: Updated description of visualization, removed orient command from example.
- 13:5313:53, 8 June 2012 diff hist +27 Elbow angle →Examples: updated gallery heights and widths
- 13:5213:52, 8 June 2012 diff hist −3 Elbow angle →Examples: updated link to second image
- 13:4713:47, 8 June 2012 diff hist +171 File:Stanfield.png No edit summary current
- 13:4513:45, 8 June 2012 diff hist +200 N File:Stanfield.png Example PDBs from Stanfield, et al., JMB 2006 as shown in Fig. 1 of that paper. elbow_angle.py was used to calculate the elbow angles and draw a representation of the vectors used in the calculation.
- 13:4213:42, 8 June 2012 diff hist −31 Elbow angle →Examples: removed gallery dimensions
- 13:3713:37, 8 June 2012 diff hist +1 Elbow angle No edit summary
- 13:2913:29, 8 June 2012 diff hist +81 N File:Elbow angle 3ghe.png View of the elbow_angle vector representation for the Fab fragment from PDB 3ghe. current
- 13:2413:24, 8 June 2012 diff hist −203 Elbow angle removed reference to github example script
- 13:2313:23, 8 June 2012 diff hist +1,415 N Elbow angle Added the page for elbow_angle.py script in Pymol-script-repo
1 May 2012
- 09:4509:45, 1 May 2012 diff hist −2 m Iterate →Details: fixed typos and removed orphaned colons.
14 February 2012
- 13:5713:57, 14 February 2012 diff hist +291 Set name →User Comments/Examples: added comment comparing set_name to shell mv
26 January 2012
- 10:2710:27, 26 January 2012 diff hist +14 MAC Install →Mighty Mouse: changed title to include magic mouse
- 10:2610:26, 26 January 2012 diff hist +545 MAC Install →Mighty Mouse: added link to MagicPrefs for 3-button Magic Mouse functionality, and description of Emulate three button mouse setting for X11
5 December 2011
- 10:2910:29, 5 December 2011 diff hist +37 m Single-word Selectors →More selectors
- 10:2910:29, 5 December 2011 diff hist +104 Single-word Selectors →More selectors: added a couple more descriptions to the list
- 10:2610:26, 5 December 2011 diff hist +138 Single-word Selectors added list of selectors (from Selector.c in source), excluding deprecated forms
9 March 2011
- 13:2913:29, 9 March 2011 diff hist −1 m Category:Structural Biology Scripts fixed typo in word "dependent" current
2 February 2011
- 12:0712:07, 2 February 2011 diff hist +37 m Ideas →Low-Level Enhancement Ideas (Mostly C-oriented): +1 for highlighting salt bridges
9 December 2010
- 13:0213:02, 9 December 2010 diff hist +5 User:Jaredsampson No edit summary
- 13:0113:01, 9 December 2010 diff hist −369 User:Jaredsampson No edit summary
- 12:3612:36, 9 December 2010 diff hist +296 Stereo mode Added example stereo_mode settings, since none were listed before.
26 October 2010
- 14:0114:01, 26 October 2010 diff hist +143 N Talk:Align Asking a question
7 September 2010
- 12:3512:35, 7 September 2010 diff hist +197 Orient →EXAMPLES: added a second image and <code> tags current
- 12:2912:29, 7 September 2010 diff hist +61 N File:1hiw orient2.png Demonstration of orient command with 1hiw, two trimers shown. current
- 12:1912:19, 7 September 2010 diff hist +431 Orient provided an example of orient for a model with NCS symmetry
- 12:1512:15, 7 September 2010 diff hist +62 N File:1hiw orient.png Demonstration of orient command with NCS symmetry of PDB 1hiw. current
- 11:5911:59, 7 September 2010 diff hist +305 N Talk:Orient Question about "principal components" criteria current
11 August 2010
- 10:3910:39, 11 August 2010 diff hist 0 Ray →Modes
- 10:3810:38, 11 August 2010 diff hist +126 Ray →Modes
17 June 2010
- 10:5910:59, 17 June 2010 diff hist −10 m Label position replaced spelling of aangstrom(?) with Å current
20 April 2010
- 14:1514:15, 20 April 2010 diff hist +1 m Cealign plugin →Discussion: fixed reference to "Calign" to "Cealign"
9 April 2010
- 11:1111:11, 9 April 2010 diff hist +4 User:Jaredsampson No edit summary
- 11:1011:10, 9 April 2010 diff hist +22 User:Jaredsampson No edit summary
- 11:1011:10, 9 April 2010 diff hist +529 N User:Jaredsampson Created page with 'Jared Sampson. I'm a lowly research technician with 5 years of experience in crystallography in 2 labs. I'm by no means an expert, but I'm gradually picking up tricks here and …'
- 10:5810:58, 9 April 2010 diff hist 0 m Hash max →Exmaple: typo correction
26 March 2010
- 12:4212:42, 26 March 2010 diff hist −1 m Selection Algebra →Selection Operator/Modifier Table: fixed formatting for "s1 in s2" description
21 January 2010
- 16:2816:28, 21 January 2010 diff hist +4 Advanced Coloring →CMYK-safe Colors: inserted word "not" to make the meaning of the sentence about RGB vs CMYK accurate.
25 August 2009
- 17:3417:34, 25 August 2009 diff hist 0 m Cealign plugin →Discussion
- 11:2711:27, 25 August 2009 diff hist +282 Talk:Cealign plugin →Disparity in description of first pair of figures: new section
21 July 2009
- 14:3014:30, 21 July 2009 diff hist 0 m Settings fixed grammar/spelling in first sentence (incredible >> incredibly)