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{| class="jtable" style="float: left; width: 90%;"
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
|-
! Server updates
| The underlying servers upon which the PyMOLWiki runs were upgraded over the weekend.  We are now fully functional.  A '''deep''' thanks to [http://www.bitgnome.net BitGnome] for donating time and hardware for the PyMOL project.
|-
|-
! fetch_host setting
! fetch_host setting
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! New Script
! New Script
| [[SelInside]]—Creates a custom selection of all atoms spatially inside some user-defined box.
| [[SelInside]]—Creates a custom selection of all atoms spatially inside some user-defined box.
|-
! New Script
| [[ContactsNCONT]]—The script selects residues and atoms from the list of the contacts found by NCONT from CCP4 Program Suite
|-
! Fun
| [http://www.youtube.com/watch?v=oCRJ4r0RDC4 PCR Rap] video made with PyMOL (YouTube).
|-
! PyMOLWiki
| Reformatted Main Page. Some delays might occur from resizing images, but that should go away once the images are cached.
|-
! PyMOLWiki
| New — Search the PyMOLWiki via [[GoogleSearch]]
|-
! PyMOL
| PyMOL is known to work under Mac OS X 10+ (Snow Leopard) using the new Fink and incentive builds.  See [[MAC_Install#PyMOL_Install_from_Source.2C_Using_Fink|Installing PyMOL under Fink]].
|-
! PyMOL
| PyMOL now has a [[Set]] command for basic settings, and a [[Set_bond]] command for bond-only settings.
|}
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Revision as of 07:58, 30 March 2010

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) GoogleSearch
News & Updates
Server updates The underlying servers upon which the PyMOLWiki runs were upgraded over the weekend. We are now fully functional. A deep thanks to BitGnome for donating time and hardware for the PyMOL project.
fetch_host setting Fetch_Host has been added to allow users to download PDBs from their PDB server (pdb, pdb euro, or pdb japan) of choice.
Fetch Fetch has been updated to also load electron density maps.
Schrodinger Buys PyMOL Schrodinger has purchased PyMOL. Development, support and open-source fun to continue! Read about the sale.
User Movie One of our users has posted another interesting movie, images from which were created with PyMOL.
New setting surface_cavity_mode to change how PyMOL displays cavities.
Search fixed. Thanks to a eagle-eyed user, our search has been fixed. Please let us know if you have any search-related problems.
New Command Cache—stores information on structures, so we don't have to recompute them.
Warren News about Warren DeLano's passing may be read on Warren's memorial page.
Setting Fetch_Path—Sets the default path for the fetch command.
New Script SelInside—Creates a custom selection of all atoms spatially inside some user-defined box.
Did you know...

Ribbon smooth

==Overview==

This PyMOL setting determines smoothly how PyMOL draws ribbons. Turning on the setting smooths out the ribbons and make the image look cleaner. The setting is by default off, and yet, when turned on shows absolutely no decreased performance.

Usage

<source lang="python">

  1. show ribbons, first

hide; show ribbon

  1. turn on smoothing

set ribbon_smooth, 1

  1. turn off smoothing

set ..→

A Random PyMOL-generated Cover. See Covers.


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