Main Page

• Table of Contents

• Alphabetized Index of all pages

• Discussion of PyMolWiki Improvements

PyMol Wiki Home

You have reached the home of the PyMolWiki, a user-driven web-oriented CMS.

We provide

• updates on PyMol
• a stable user-oriented documentation base
• a thorough treatment of the PyMol program
• feature-rich scripts for general PyMol use

New Users

The PyMol Wiki actively seeks new users and contributors! However, due to massive amount of spamming, we've changed the registration process, until further notice. If you would like access, you will need to be verified by a system administrator/sysop. To do so, email Jason dot Vertrees at gmail dot com (and tell me why you use PyMol). Also, be sure to include your desired user name, real name, and email address. Once we figure out a way to automatically prevent spamming, we'll return to the normal method of registration.

News

PyMol

• Due to some maintenance, users may encounter some unexpected actions from the wiki. If you notice something out of the ordinary, please contact the admin. This message will be removed when the upgrade is complete (or abandoned).
• Slerpy, a set of pymol command extensions to simplify complex movie making is now available.
• Updated the Kabsch code with a more elegant solution; fixed a small rotation bug.
• Pymol 0.99 is out! Get it here.
• A new version of APBS plugin is available on Michael Lerner's Page.
• New Beta Releases available.
• New cool ray tracing features added!

Wiki

• Settings now contains documentation on:

              - helix roundness
              - ribbon sampling
              - cartoon sampling
              - cartoon highlight coloring
              - cartoon color blending vs discrete colors
              - and more!  now 48 documented (with examples); just 470 to go....

• SURFNET information on reading surfaces from other programs added.
• Two new Plugins have been added, NsSNP Loader and Proxy Config.
• Added a page that lists all PyMol settings. We need to start documenting these.
• MAC_Install page has been developed. It describes pymol and apbs issues specific to Mac OS X.
• APBS page has been established.
• APBS How to set this up on OS X and on Linux has been started but needs contributions.

News Archive

• See our Older_News.

Links of Interest

• Top Level Table of Contents
• Frequently Asked Questions -- new!
• How to get involved! -- read me if you want to add something
• Script Library -- add one! (rTools info!)
• PyMol Commands (>130 documented!)
• PyMol Settings (6 newly documented; only 470 to go...)
• All Pages
• Plugins
• See All Categories