Main Page: Difference between revisions

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(PyMOL v2.2 release)
(Plugins Tutorial updated for PyQt5)
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|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
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| [[Plugins Tutorial]] updated for PyQt5
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! Official Release
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! New Script
! New Script
| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
|-
! New Plugin
| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
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! New Plugin
| [[PyANM|PyANM]] is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
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! New Plugin
| [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.
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! New Plugin
| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.0]] is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
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! 3D using Geforce
| PyMOL can now be [http://forums.geforce.com/default/topic/571604/3d-vision/3d-vision-working-with-qbs-in-opengl-software-using-geforce/2/ visualized in 3D using Nvidia GeForce video cards] (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
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! Older News
! Older News

Revision as of 11:21, 14 November 2018

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Tutorial Plugins Tutorial updated for PyQt5
Official Release PyMOL v2.2 has been released on July 24, 2018.
POSF PyMOL Open-Source Fellowship program accepting applications for 2018-2019
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

BiologicalUnit/Quat

Note: PyMOL 1.8 can load biological units from mmCIF files with the assembly setting.

Included in psico
This command or function is available from psico, which is a PyMOL extension.

Module (biomolecule) psico.xtal (biomolecule)

This script does more or less the same as BiologicalUnit. It creates the quaternary structure (BIOMOLECULE 1 assembly) from the REMARK 350 header.

This script is convenient to use because it searches automatically for the PDB file in the current directory, in fetch_path and (if available) in your local PDB mirror.

Also available from psico, but the command is called biomolecule instead of quat.

Example Usage

fetch 3bw1, type=pdb
quat 3bw1
as cartoon

The Code

<source lang="python"> (c) 2010-2011 Thomas Holder, MPI for Developmental Biology

Module for reading REMARK records from PDB files and in particular generate quaterny structure from REMARK 350.

import sys, os from pymol ..→

A Random PyMOL-generated Cover. See Covers.


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