Pdb use ter records: Difference between revisions
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(fix broken link to PDB page (ter format) and add this page to the settings page) |
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When a molecule (e.g. a protein molecule) is saved in pdb format by PyMOL, a line of [http://www.wwpdb.org/documentation/format33/sect9.html#TER TER] record is inserted wherever the residue id is not sequential. To suppress this feature, set <tt>pdb_use_ter_records</tt> value to 0 before saving protein molecules. | When a molecule (e.g. a protein molecule) is saved in pdb format by PyMOL, a line of [http://www.wwpdb.org/documentation/file-format-content/format33/sect9.html#TER TER] record is inserted wherever the residue id is not sequential. To suppress this feature, set <tt>pdb_use_ter_records</tt> value to 0 before saving protein molecules. | ||
=Example= | =Example= | ||
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cmd.set(name='pdb_use_ter_records', value=0) # same effect | cmd.set(name='pdb_use_ter_records', value=0) # same effect | ||
</source> | </source> | ||
[[Category:Settings|Pdb_use_ter_records]] | |||
Revision as of 18:03, 15 September 2015
When a molecule (e.g. a protein molecule) is saved in pdb format by PyMOL, a line of TER record is inserted wherever the residue id is not sequential. To suppress this feature, set pdb_use_ter_records value to 0 before saving protein molecules.
Example
get pdb_use_ter_records # return current value of pdb_use_ter_records
set pdb_use_ter_records, 0
import cmd
cmd.set(name='pdb_use_ter_records', value=0) # same effect