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PyMol Wiki Home

You have reached the (new) home of the PyMolWiki, a user-driven web-oriented CMS.

Moving In

Please excuse the mess as we create the PyMolWiki site. The wiki will be a valuable educational & reference tool for PyMol users.

Helping

If you feel like helping out, please login and get to work.  :-) For design/layout purposes you must be logged in to edit pages. We now need people to assist with

• Wiki schema/design/organization
• Graphic design and CSS layout
• Importing the email list content
• Smoothing out the edges
• Etc...

We need your help. So join today & happy editing!

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== Initial Wiki Layout Suggestion == (Warren Delano)

• Mouse Controls
• Command Language
• Atom Selections
• Ray-tracing
• Movies and Animations
• Cartoon Representations
• Settings Reference (all settings and what they do)
• Stereo 3D Display
  • Hardware Options
  • Linux XFree86 Configuration
• Crystallography Aplications
  • Symmetry
  • Electron Density
• Arbitrary Graphics Objects
• Python Integration
• Scenes

User Additions

• Installation (Tree)
  • Hardware Requirements
  • Software Requirements
  • OS Dependent
    • Linux
    • MAC
    • Windows
    • Script Library

• NMR Applicaitons (Doug Kojetin)
• Plugins/Modules (Doug Kojetin)
  • APBS Plugin

• Plugins (Michael George Werner)
  • List of Plugins
  • Tutorial on writing plugins
  • Others

• Structure Alignment (Nat Echols)
  • Structure Alignment Editor
• 3rd Party Applications
  • Movies
  • Codecs

• Displaying biochemical properties (Kristian Rother)
• Coloring molecules
• Rendering molecules
  • "basics of displaying molecules".
  • "displaying basic chemical properties", like double bonds, h-bonds, bond angles and b-factors.
• Modeling and editing structures.
• How to do electrostatics and energy minimization.
• Launching PyMOL (has been asked often)
• Some kind of "script collection" would be very useful.

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Tree 02:09, 16 Feb 2005 (CST)

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