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News & Updates Official Release PyMOL, AxPyMOL, and JyMOL v1.7.4 have all been released on December 3, 2014. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014. Official Release PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS. New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL. New Script cgo_arrow draws an arrow between two picked atoms. Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL. Older News See Older News.

Did you know... Measure Distance # This script writes the distance from # atom mol1///25/ha to atom mol1///26/ha # out to the file "dist.txt" # Simply change your selections to see different distances. # import PyMOL's command namespace from pymol import cmd # open dist.txt for writing f=open('dist.txt','w') # calculate the distance and store it in dst dst=cmd.distance('tmp','mol1///25/ha','mol1///26/ha') # write the formatted value of the distance (dst) # to the output file f.write("%8.3f\n"%dst) # close the output file. f.close() See Also Distance

A Random PyMOL-generated Cover. See Covers.