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Revision as of 15:46, 17 November 2009


Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) GoogleSearch


News & Updates
Warren News about Warren DeLano's passing may be read on Warren's memorial page.
PyMOLWiki Reformatted Main Page. Some delays might occur from resizing images, but that should go away once the images are cached.
PyMOLWiki New — Search the PyMOLWiki via GoogleSearch
PyMOL PyMOL is known to work under Mac OS X 10+ (Snow Leopard) using the new Fink and incentive builds. See Installing PyMOL under Fink.
PyMOL PyMOL now has a Set command for basic settings, and a Set_bond command for bond-only settings.
PyMOL Space— new command to control PyMOL's usage of color spaces.
Do you know this PyMOL command...

Process All Files In Directory

=Explanation=

For a given directory with PDB files in it, the following code will output, for each PDB, the bound disulfide bond lengths like this: 

1alk.pdb
  A CYS 168 SG
  A CYS 178 SG
    1.975
  A CYS 286 SG
  A CYS 336 SG
    1.995
  B CYS 168 SG
  B CYS 178 SG
    1.996
  B CYS 286 SG
..→
A Random PyMOL-generated Cover. See Covers.
Random PyMOL-generated Journal Cover


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