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# Plugins | # Plugins | ||
# High-level applications (Crystallography, NMR) | # High-level applications (Crystallography, NMR) | ||
## Crystallography Applications]] | |||
### [[Symmetry]] | |||
### [[Electron Density]] | |||
## [[NMR Applications]] | |||
### [[Working with a Family of Structures]] | |||
### [[Superimposition and RMSD]] | |||
### [[NMR Restraints Analysis]] | |||
# 3rd Party Software | # 3rd Party Software | ||
# Using PyMol For Unintended Uses (OpenGL Object Renderer) | # Using PyMol For Unintended Uses (OpenGL Object Renderer) | ||
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*** [[Hardware Options]] | *** [[Hardware Options]] | ||
*** [[Linux XFree86 Configuration]] | *** [[Linux XFree86 Configuration]] | ||
* [[Arbitrary Graphics Objects]] | * [[Arbitrary Graphics Objects]] | ||
* [[Python Integration]] | * [[Python Integration]] | ||
Revision as of 10:55, 17 February 2005
PyMol Wiki Home
You have reached the (new) home of the PyMolWiki, a user-driven web-oriented CMS.
Moving In
Please excuse the mess as we create the PyMolWiki site. The wiki will be a valuable educational & reference tool for PyMol users.
Helping
If you feel like helping out, please login and get to work. :-) For design/layout purposes you must be logged in to edit pages. We now need people to assist with
- Wiki schema/design/organization: Below you'll find the current layout design
- Graphic design and CSS layout: We need logos, BG images and CSS layout
- Importing the email list content: We have (lots) of email to sift through, extract data from and import into the Wiki
- Smoothing out the edges: Editors are needed just to fix our typos!
- Etc...
Editors Needed
If you feel you have the time to help import data into the PyMol wiki, please email Tree.
We need your help. So join today & happy editing!
== Initial Wiki Layout Suggestion == (Warren Delano; Tree; Doug Kojetin; Michael George Werner; Kristian Rother; Nat Echols; Roger Dodd)
Sections
- Technical Issues (installation, hardware)
- Basic Usage (controls, rendering, selections)
- Advanced Issues (Ray tracing, settings)
- Scripting
- Plugins
- High-level applications (Crystallography, NMR)
- Crystallography Applications]]
- NMR Applications
- 3rd Party Software
- Using PyMol For Unintended Uses (OpenGL Object Renderer)
Subsections
We need to put each one of these in a category above, or make a new section above where appropriate.
- Mouse Controls
- Command Language
- Atom Selections
- Ray-tracing
- Movies and Animations
- Cartoon Representations
- Settings Reference (all settings and what they do)
- Graphics
- Arbitrary Graphics Objects
- Python Integration
- Scenes
- Modeling and editing structures.
- How to do electrostatics and energy minimization.
- Launching PyMOL (has been asked often)
- Some kind of "script collection" would be very useful
- Creating publication-quality images HOWTO
Proposal for structure
Most of these points fall into some higher category. Here is a proposal how they could be arranged (krother):
- I. Technical issues (installation, hardware)
- II. Basic usage (controls, rendering, selections)
- III. Advanced issues (Ray tracing, settings, movies)
- IV. Scripting
- V. Plugins
- VI. High-level applications (Crystallography, NMR)
Tree 02:09, 16 Feb 2005 (CST)