Main Page: Difference between revisions

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! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | Wiki
! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | Wiki
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| style="padding: 3px 5px 10px 15px;"| ♦ Added a [[COM|simple script]] for finding the center or mass, or moving a selection to the origin.
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| style="padding: 3px 5px 10px 15px;"| ♦ Added some information on how PyMOL handles [[Nonstandard_Amino_Acids]].
| style="padding: 3px 5px 10px 15px;"| ♦ Added some information on how PyMOL handles [[Nonstandard_Amino_Acids]].
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| style="padding: 3px 5px 10px 15px;"| ♦ [[Gallery]] -- Did you make a [[:Image:Ccp4_map.png|cool image]]?  Pop it into the PyMOLWiki Gallery with the PyMOL command you used.  Looking for a particular representation--start here (new!).
| style="padding: 3px 5px 10px 15px;"| ♦ [[Gallery]] -- Did you make a [[:Image:Ccp4_map.png|cool image]]?  Pop it into the PyMOLWiki Gallery with the PyMOL command you used.  Looking for a particular representation--start here (new!).
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| style="padding: 3px 5px 10px 15px;"| ♦ [http://www.google.com/analytics/ Google Analytics] cookies/tracking added to the wiki.  We're just doing hit counts and watching what people do so we can improve the wiki.
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| style="padding: 3px 5px 10px 15px;"| ♦ [[CheatSheet|PyMOL Cheat Sheet]] (reference card) has been donated.  It's also posted in the table above for quick access.
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| style="padding: 3px 5px 10px 15px;"| ♦ '''[[Gsoc2008|Google Summer of Code 2008 for PyMOL]]''' has been created.  '''Update:''' PyMOL wasn't chosen, so this page is now about ideas for improving PyMOL.
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| style="padding: 3px 5px 10px 15px;"| ♦ Added a special category/section for active PyMOL [[:Category:Tutorials|Tutorials]].  These are pages not just with information, but easy to understand, step-by-step pages from which to learn.
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|valign="bottom" width="150px" style="padding: 0 20px 20px 0" |[[Image:refcard.png|155px]] Screenshot of the donated [[CheatSheet|PyMOL reference card]].
|valign="bottom" width="150px" style="padding: 0 20px 20px 0" |[[Image:refcard.png|155px]] Screenshot of the donated [[CheatSheet|PyMOL reference card]].
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! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | PyMOL
! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | PyMOL
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| style="padding: 3px 5px 10px 15px;"| ♦ PyMOL now comes with some builtin examples: look in the '''examples''' directory of your source tree.
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| style="padding: 3px 5px 10px 15px;"| ♦ [[group]] command has been added.
| style="padding: 3px 5px 10px 15px;"| ♦ [[group]] command has been added.
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! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | Scripts & Plugins
! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | Scripts & Plugins
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| style="padding: 3px 5px 10px 15px;"| ♦ Added a [[COM|simple script]] for finding the center or mass, or moving a selection to the origin.
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| style="padding: 3px 5px 10px 15px;"| ♦ [[ImmersiveViz]] -- Headtracking user interface for PyMOL  (watch the video)!
| style="padding: 3px 5px 10px 15px;"| ♦ [[ImmersiveViz]] -- Headtracking user interface for PyMOL  (watch the video)!

Revision as of 14:16, 28 August 2008

Welcome to the PyMOL Wiki
We are the community-based support site for the popular molecular visualization program, PyMOL.


New Users
New users are encouraged to join. Feel free to add any appropriate content; make an account and get started!
Quick Links
Table of Contents Index of all pages PyMOL Cheat Sheet: PDF Wiki Page
Tutorials Commands Settings: All Documented
Script Library Plugins See All Categories
Frequently Asked Questions Gallery About PyMOL
News and Updates (archive)
Wiki
♦ Added some information on how PyMOL handles Nonstandard_Amino_Acids.
♦ Downtime: The PyMOLWiki underwent some downtime due to FS problems. There are also upgrades planned for this week, so we may expect a little downtime for that. We've been very fortunate to have hosting from BitGnome.Net; they've done an incredible job!
♦ Gallery -- Did you make a cool image? Pop it into the PyMOLWiki Gallery with the PyMOL command you used. Looking for a particular representation--start here (new!).
Refcard.png Screenshot of the donated PyMOL reference card.
PyMOL
♦ PyMOL now comes with some builtin examples: look in the examples directory of your source tree.
♦ group command has been added.
♦ The truly awesome grid_mode setting has been added.
♦ Ellipsoids representation added for drawing thermal ellipsoids.
Gm1.png Screenshot of Grid Mode in action.
Scripts & Plugins
♦ Added a simple script for finding the center or mass, or moving a selection to the origin.
♦ ImmersiveViz -- Headtracking user interface for PyMOL (watch the video)!
♦ Colorama --a PyMOL plugin which allows to color objects using adjustable scale bars
♦ ProMOL plugin added. Catalytic site prediction, other tools. Redirects to website.
♦ EMovie plugin added. Easy movies in PyMol using a GUI.
♦ DYNMAP plugin page created. Check it out!
♦ EZ-Viz
COLORAMA-screenshot.jpg Screenshot of Colorama.
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