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News & Updates New Plugin CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models Official Release PyMOL v2.5 has been released on May 10, 2021. Python 3 New Python 3 compatibility guide for scripts and plugins POSF New PyMOL fellowship announced for 2022-2023 Tutorial Plugins Tutorial updated for PyQt5 New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll! Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons Older News See Older News.

Did you know... B2transparency Type Python Module Download b2transparency.py Author(s) Thomas Holder License BSD-2-Clause This code has been put under version control in the project Pymol-script-repo b2transparency can set transparency settings like transparency or sphere_transparency for each atom scaled by b-factor (or any other numeric atomic property). Usage b2transparency [ selection [, setting [, minimum [, maximum [, var ]]]]] Example # some dummy molecule with increasing b-factor along the chain fab AAAAAAAAAAAAA alter all, b=resv b2transparency all as sticks show surface set surface_color, gray See Also spectrum

A Random PyMOL-generated Cover. See Covers.