CavitOmiX: Difference between revisions
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[[File:Cavitomix.png|400px|center]] | [[File:Cavitomix.png|400px|center]] | ||
==CavitOmiX 1.0== | |||
[https://innophore.com/cavitomix CavitOmiX]. | |||
* Predict protein structures within seconds for any protein sequence using [OpenFold by NVIDIA BioNeMo] (coming soon!) and [ESMFold by Meta] | |||
* [AlphaFold2] models can be retrieved via UniProt ID | |||
* Cavities can be calculated for molecules loaded in PyMOL | |||
* Analyze the hydrophobicity of your cavities | |||
* Protein structures can be retrieved from the [PDB] using the PDB code | |||
* Mix and match all the above in a single entry, align the structures and get an quick overview | |||
* Cavity calculation setting scan be changed | |||
* Each [https://innophore.com Cavity] is an "residue" entry, each cavity point is an "atom", so you can select, remove, copy, represet cavities to your liking! | |||
==Overview== | |||
* | |||
* | |||
[[File:.png|500px|thumb|center|CavitOmiX PyMOL plugin empowered by NVIDIA BioNeMo ]] | |||
==References== | |||
# [https://innophore.com Innophore GmbH] | |||
# [NVIDIA BioNeMo] | |||
[[Category:Surfaces and Voids|CavitOmiX]] | |||
[[Category:Biochemical_Properties]] | |||
[[Category:Plugins]] | [[Category:Plugins]] | ||
[[Category:Pymol-script-repo]] | [[Category:Pymol-script-repo]] | ||
[[Category:NVIDIA]] | [[Category:NVIDIA]] | ||
[[Category:BioNeMo]] | [[Category:BioNeMo]] | ||
Revision as of 07:04, 23 December 2022
| Type | PyMOL Plugin |
|---|---|
| Download | https://innophore.com/cavitomix |
| Author(s) | Georg Steinkellner, Christian C. Gruber, Karl Gruber*, and the Innophore Team |
| License | |
| https://innophore.com | |
CavitOmiX 1.0
- Predict protein structures within seconds for any protein sequence using [OpenFold by NVIDIA BioNeMo] (coming soon!) and [ESMFold by Meta]
- [AlphaFold2] models can be retrieved via UniProt ID
- Cavities can be calculated for molecules loaded in PyMOL
- Analyze the hydrophobicity of your cavities
- Protein structures can be retrieved from the [PDB] using the PDB code
- Mix and match all the above in a single entry, align the structures and get an quick overview
- Cavity calculation setting scan be changed
- Each Cavity is an "residue" entry, each cavity point is an "atom", so you can select, remove, copy, represet cavities to your liking!
Overview
File:.png
CavitOmiX PyMOL plugin empowered by NVIDIA BioNeMo
References
- Innophore GmbH
- [NVIDIA BioNeMo]