Main Page: Difference between revisions

From PyMOLWiki
Jump to navigation Jump to search
No edit summary
(PyMOL 2.5 release announcement)
Line 30: Line 30:
|-
|-
! Official Release
! Official Release
| [https://pymol.org PyMOL v2.4 has been released] on May 20, 2020.
| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
|-
|-
! Python 3
! Python 3

Revision as of 11:11, 10 May 2021

hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Movie fade

Type Python Module
Download movie_fade.py
Author(s) Jason Vertrees and Thomas Holder
License BSD-2-Clause
This code has been put under version control in the project Pymol-script-repo

This script will help fade in and out settings in a movie. Just specify the setting, it's initial value at an initial frame and it's ending value and frame.

Usage

movie_fade setting, startFrame, startVal, endFrame, endVal [, selection ]

Examples

To fade in sticks from fully transparent to fully opaque across 60 frames do:

mset 1x60
movie_fade stick_transparency, 1, 1., 60, 0.

More complex example which involves camera motion:

fetch 1rx1, async=0
as cartoon
show surface
mset 1x80
movie.roll
movie_fade transparency,  1, 0., 40, 1.
movie_fade transparency, 41, 1., 80, 0.

Example file:

Result

<source lang="python"> import movie_fade

fetch 1hpv, async=0 orient

  1. format

bg black show_as cartoon color marine, ss s color ..→

A Random PyMOL-generated Cover. See Covers.