Get Model: Difference between revisions

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Line 15: Line 15:
atoms = cmd.get_model("chain A")
atoms = cmd.get_model("chain A")
for at in atoms.atom:
for at in atoms.atom:
     print("ATOM DEFINITION: "+at.chain+" "\
     print("ATOM DEFINITION: "+at.model+" "\
                            +at.chain+" "\
                             +at.resn+" "\
                             +at.resn+" "\
                             +str(at.resi)+" "\
                             +str(at.resi)+" "\

Latest revision as of 14:04, 9 August 2024

get_model returns a model object.

PYMOL API

cmd.get_model(string "selection", integer "state" )

USAGE

cmd.get_model("chain A")

NOTES

It can be useful to loop through all the atoms of a selection (rather than using the iterate command)

atoms = cmd.get_model("chain A")
for at in atoms.atom:
    print("ATOM DEFINITION: "+at.model+" "\
                             +at.chain+" "\
                             +at.resn+" "\
                             +str(at.resi)+" "\
                             +at.name+" "\
                             +str(at.index)+" "\
                             +"%.2f " % (at.b)\
                             +str(at.coord[0])+" "\
                             +str(at.coord[1])+" "\
                             +str(at.coord[2]))

SEE ALSO