Pdb use ter records: Difference between revisions
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* <= 1.5.0.4 feature broken for HETATM polymer residues (e.g. MSE) | * <= 1.5.0.4 feature broken for HETATM polymer residues (e.g. MSE) | ||
== Example == | |||
<source lang="python"> | <source lang="python"> | ||
get pdb_use_ter_records # return current value of pdb_use_ter_records | get pdb_use_ter_records # return current value of pdb_use_ter_records | ||
| Line 14: | Line 14: | ||
</source> | </source> | ||
== | == PyMOL API == | ||
<source lang="python"> | <source lang="python"> | ||
cmd.set('pdb_use_ter_records', 0) | cmd.set('pdb_use_ter_records', 0) | ||
</source> | </source> | ||
== | == See Also == | ||
[[ | |||
* [[pdb_conect_nodup]] | |||
* [[pdb_conect_all]] | |||
[[Category:Settings|Pdb_use_ter_records]] | [[Category:Settings|Pdb_use_ter_records]] | ||
Latest revision as of 07:32, 17 December 2018
When a molecule (e.g. a protein molecule) is saved in pdb format by PyMOL, a line of TER record is inserted wherever the residue id is not sequential. To suppress this feature, set pdb_use_ter_records value to 0 before saving protein molecules.
Version History
- 2.3.0 new implementation, works correctly with gaps
- 1.8.4 feature removed
- <= 1.8.2 feature broken for various use cases (e.g. gaps)
- <= 1.5.0.4 feature broken for HETATM polymer residues (e.g. MSE)
Example
get pdb_use_ter_records # return current value of pdb_use_ter_records
set pdb_use_ter_records, 0
PyMOL API
cmd.set('pdb_use_ter_records', 0)