Get fastastr: Difference between revisions
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fetch 1ubq, async=0 | fetch 1ubq, async=0 | ||
print cmd.get_fastastr('all') | print(cmd.get_fastastr('all')) | ||
</syntaxhighlight> | </syntaxhighlight> | ||
Revision as of 12:13, 6 March 2017
get_fastastr is an API-only function which returns the one-letter amino acid sequence in FASTA format.
PyMOL API
cmd.get_fastastr(string selection='all', int state=-1, int quiet=1)
Example
fetch 1ubq, async=0
print(cmd.get_fastastr('all'))
>1ubq MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV LRLRGG
Known Issues
- Due to a bug this function currently only works for selections from a single object (see #3466472)
- The sequences of different chains are just concatenated and returned as a single sequence