Msms: Difference between revisions
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|type = plugin | |type = plugin | ||
|filename = plugins/msms.py | |filename = plugins/msms.py | ||
|author = [[User:Hongbo_zhu|Hongbo Zhu | |author = [[User:Hongbo_zhu|Hongbo Zhu]] | ||
|license = - | |license = - | ||
}} | }} | ||
= Introduction = | = Introduction = | ||
[http://mgltools.scripps.edu/packages/MSMS/ MSMS] is an excellent tool for computing protein solvent excluded surface (SES). MSMS Plugin for PyMOL provides a graphical user interface for running MSMS and displaying its results in PyMOL. MSMS Plugin can be obtained from | [http://mgltools.scripps.edu/packages/MSMS/ MSMS] is an excellent tool for computing protein solvent excluded surface (SES). MSMS Plugin for PyMOL provides a graphical user interface for running MSMS and displaying its results in PyMOL. Most recent MSMS Plugin code can be obtained from [https://github.com/hongbo-zhu-cn/Pymol-script-repo/blob/master/plugins/msms.py this link]. | ||
Only works in Linux, since '''pdb_to_xyzrn''' is a shell script. | Only works in Linux, since '''pdb_to_xyzrn''' is a shell script. Windows users please contact author for a script replacing '''pdb_to_xyzrn'''. | ||
= | = External links = | ||
[[File:Example.png|400px|thumb|right|Demonstration of MSMS plugin.]] | [[File:Example.png|400px|thumb|right|Demonstration of MSMS plugin.]] | ||
* Most recent code on github: [https://github.com/hongbo-zhu-cn/Pymol-script-repo/blob/master/plugins/msms.py MSMS Plugin for PyMOL @ GitHub] | |||
http://www.biotec.tu-dresden.de/~hongboz/msms_pymol/msms_pymol.html | * Original site (not updated anymore): [http://www.biotec.tu-dresden.de/~hongboz/msms_pymol/msms_pymol.html MSMS Plugin for PyMOL] | ||
[[Category:Plugins]] | [[Category:Plugins]] | ||
[[Category:Pymol-script-repo]] | [[Category:Pymol-script-repo]] | ||
Revision as of 03:56, 12 April 2012
| Type | PyMOL Plugin |
|---|---|
| Download | plugins/msms.py |
| Author(s) | Hongbo Zhu |
| License | - |
| This code has been put under version control in the project Pymol-script-repo | |
Introduction
MSMS is an excellent tool for computing protein solvent excluded surface (SES). MSMS Plugin for PyMOL provides a graphical user interface for running MSMS and displaying its results in PyMOL. Most recent MSMS Plugin code can be obtained from this link.
Only works in Linux, since pdb_to_xyzrn is a shell script. Windows users please contact author for a script replacing pdb_to_xyzrn.
External links
- Most recent code on github: MSMS Plugin for PyMOL @ GitHub
- Original site (not updated anymore): MSMS Plugin for PyMOL