Read Molstr: Difference between revisions
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'''read_molstr''' reads an MDL MOL format file as a string | '''read_molstr''' reads an MDL MOL format file as a string | ||
===PYMOL API ONLY=== | ===PYMOL API ONLY=== | ||
<source lang="python"> | <source lang="python"> | ||
cmd.read_molstr( string molstr, string name, int state=0, int finish=1, int discrete=1 ) | cmd.read_molstr( string molstr, string name, int state=0, \ | ||
int finish=1, int discrete=1 ) | |||
</source> | </source> | ||
===NOTES=== | ===NOTES=== | ||
'''state''' is a 1-based state index for the object, or 0 to append. | *'''state''' is a 1-based state index for the object, or 0 to append. | ||
'''finish''' is a flag (0 or 1) which can be set to zero to improve performance when loading large numbers of objects, but you must call '''finish_object''' when you are done. | * '''finish''' is a flag (0 or 1) which can be set to zero to improve [[:Category:Performance|performance]] when loading large numbers of objects, but you must call '''finish_object''' when you are done. | ||
'''discrete''' is a flag (0 or 1) which tells PyMOL that there will be no overlapping atoms in the file being loaded. '''discrete''' objects save memory but can not be edited. | * '''discrete''' is a flag (0 or 1) which tells PyMOL that there will be no overlapping atoms in the file being loaded. '''discrete''' objects save memory but can not be edited. | ||
[[Category:Commands| | [[Category:Commands|Read Molstr]] | ||
[[Category:Performance|Read Molstr]] | |||
[[Category:States|Read Molstr]] | |||
Latest revision as of 13:50, 17 November 2009
read_molstr reads an MDL MOL format file as a string
PYMOL API ONLY
cmd.read_molstr( string molstr, string name, int state=0, \
int finish=1, int discrete=1 )
NOTES
- state is a 1-based state index for the object, or 0 to append.
- finish is a flag (0 or 1) which can be set to zero to improve performance when loading large numbers of objects, but you must call finish_object when you are done.
- discrete is a flag (0 or 1) which tells PyMOL that there will be no overlapping atoms in the file being loaded. discrete objects save memory but can not be edited.