Intra rms: Difference between revisions
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Hongbo zhu (talk | contribs) (user comments had been removed for its irrelevance. They are copied to rms page given its importance and add a link to the page.) |
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'''intra_rms''' calculates rms fit values for all states of an object over an atom selection relative to the indicated state. Coordinates are left unchanged. The rms values are returned as a python array. | |||
===PYMOL API=== | ===PYMOL API=== | ||
<source lang="python"> | <source lang="python"> | ||
| Line 9: | Line 8: | ||
===PYTHON EXAMPLE=== | ===PYTHON EXAMPLE=== | ||
<source lang="python"> | <source lang="python"> | ||
from pymol import cmd | |||
rms = cmd.intra_rms("(name ca)",1) | |||
</source> | </source> | ||
===USER | ===USER COMMENTS=== | ||
See [[Rms]] for selection caveats for this group of commands. | |||
===SEE ALSO=== | ===SEE ALSO=== | ||
[[Fit]], [[Rms]], [[Rms_Cur]], [[Intra_Fit]], [[Intra_Rms_Cur]], [[Pair_Fit]] | |||
[[Category:Commands| | [[Category:Commands|Intra Rms]] | ||
[[Category:States|Intra Rms]] | |||
[[Category:Structure_Alignment|Intra Rms]] | |||
Latest revision as of 04:52, 20 November 2013
intra_rms calculates rms fit values for all states of an object over an atom selection relative to the indicated state. Coordinates are left unchanged. The rms values are returned as a python array.
PYMOL API
cmd.intra_rms( string selection, int state)
PYTHON EXAMPLE
from pymol import cmd
rms = cmd.intra_rms("(name ca)",1)
USER COMMENTS
See Rms for selection caveats for this group of commands.