Save sep: Difference between revisions
Jump to navigation
Jump to search
(New page: <code> from pymol import cmd import glob import re def save_sep(prefix=''): """ save_sep <files>, <object> saves multiple objects into multiple files using an optional prefix name....) |
No edit summary |
||
| (8 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
< | == Description == | ||
Saves all objects as separate PDB files. Useful if you want to do things like combine separate *.pse files. | |||
== Code == | |||
<source lang="python"> | |||
from pymol import cmd | from pymol import cmd | ||
import glob | import glob | ||
| Line 6: | Line 10: | ||
def save_sep(prefix=''): | def save_sep(prefix=''): | ||
""" | """ | ||
save_sep < | save_sep <prefix> | ||
saves multiple objects into multiple files using an optional prefix name. | saves multiple objects into multiple files using an optional prefix name. | ||
| Line 12: | Line 16: | ||
e.g. save_sep prefix | e.g. save_sep prefix | ||
""" | """ | ||
obj_list = cmd.get_names( | obj_list = cmd.get_names("all") | ||
if obj_list: | if obj_list: | ||
for i in range(len(obj_list)): | for i in range(len(obj_list)): | ||
obj_name = "%s%s.pdb" % (prefix, obj_list[i]) | obj_name = "%s%s.pdb" % (prefix, obj_list[i]) | ||
cmd.save(obj_name, obj_list[i]) | cmd.save(obj_name, obj_list[i]) | ||
| Line 25: | Line 28: | ||
cmd.extend('save_sep',save_sep) | cmd.extend('save_sep',save_sep) | ||
</ | </source> | ||
[[Category:Script Library]] | |||
[[Category:States]] | |||
[[Category:Saving]] | |||
[[Category:ObjSel_Scripts]] | |||
Latest revision as of 11:45, 4 June 2009
Description
Saves all objects as separate PDB files. Useful if you want to do things like combine separate *.pse files.
Code
from pymol import cmd
import glob
import re
def save_sep(prefix=''):
"""
save_sep <prefix>
saves multiple objects into multiple files using an optional prefix name.
e.g. save_sep prefix
"""
obj_list = cmd.get_names("all")
if obj_list:
for i in range(len(obj_list)):
obj_name = "%s%s.pdb" % (prefix, obj_list[i])
cmd.save(obj_name, obj_list[i])
print "Saving %s" % obj_name
else:
print "No objects found"
cmd.extend('save_sep',save_sep)