Stick radius: Difference between revisions
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==Overview== | ==Overview== | ||
This setting affects the radius of sticks in the sticks representation. Default scale is set to 0.25. | This setting affects the radius of sticks in the sticks representation. Default scale is set to 0.25. | ||
In newer versions of PyMOL, one may set the [[Stick_radius]] on a per-bond basis. So, you can set for example, the radius of only selected bonds if you want. This is done through the [[Set_bond]] command. | |||
<gallery> | <gallery> | ||
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==Syntax== | ==Syntax== | ||
<source lang="python"> | <source lang="python"> | ||
set_bond stick_radius, ''size'', selection | |||
</source> | </source> | ||
where, | where, | ||
*''size'' can be any float number. Using 0.25 (default value) is usually appropriate for most representations, although 0.15 migh be preferred for comparing closely related structures, e.g., conformers. | *''size'' can be any float number. Using 0.25 (default value) is usually appropriate for most representations, although 0.15 migh be preferred for comparing closely related structures, e.g., conformers. | ||
''Note:'' <source lang="python"> | ''Note:'' <source lang="python">set_bond stick_radius</source> by itself will revert to 1.00. | ||
==If the above commands do not work== | |||
You can do something like below | |||
<source lang="python"> | |||
To set on the entire object | |||
set stick_radius=0.12 | |||
OR | |||
create myObj, <selection> | |||
Ex : create myObj, hetatm | |||
set stick_radius,0.2,myObj | |||
</source> | |||
==Related settings== | ==Related settings== | ||
*[[Set_bond]] | |||
*[[sphere_scale]] | *[[sphere_scale]] | ||
*[[stick_ball_ratio]] | *[[stick_ball_ratio]] | ||
Latest revision as of 01:00, 2 September 2009
Overview
This setting affects the radius of sticks in the sticks representation. Default scale is set to 0.25.
In newer versions of PyMOL, one may set the Stick_radius on a per-bond basis. So, you can set for example, the radius of only selected bonds if you want. This is done through the Set_bond command.
stick_radius set to 0.05
stick_radius set to the default 0.25
stick_radius set to 0.85
Syntax
set_bond stick_radius, ''size'', selection
where,
- size can be any float number. Using 0.25 (default value) is usually appropriate for most representations, although 0.15 migh be preferred for comparing closely related structures, e.g., conformers.
Note:
set_bond stick_radius
by itself will revert to 1.00.
If the above commands do not work
You can do something like below
To set on the entire object
set stick_radius=0.12
OR
create myObj, <selection>
Ex : create myObj, hetatm
set stick_radius,0.2,myObj