Get fastastr: Difference between revisions
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[[get_fastastr]] is an API-only function which returns the one-letter amino acid sequence in FASTA format. | [[get_fastastr]] is an API-only function which returns the one-letter amino acid sequence in FASTA format. | ||
''Changed in PyMOL 2.2: Sequences per chain'' | |||
''Changed in PyMOL 2.2: Nucleic acid support'' | |||
== PyMOL API == | == PyMOL API == | ||
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<syntaxhighlight lang="python"> | <syntaxhighlight lang="python"> | ||
fetch 1ubq, async=0 | fetch 1ubq, async=0 | ||
print cmd.get_fastastr('all') | print(cmd.get_fastastr('all')) | ||
</syntaxhighlight> | </syntaxhighlight> | ||
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MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV | ||
LRLRGG | LRLRGG | ||
== See Also == | == See Also == | ||
* [[Aa codes]] | * [[Aa codes]] | ||
Latest revision as of 12:49, 30 July 2020
get_fastastr is an API-only function which returns the one-letter amino acid sequence in FASTA format.
Changed in PyMOL 2.2: Sequences per chain
Changed in PyMOL 2.2: Nucleic acid support
PyMOL API
cmd.get_fastastr(string selection='all', int state=-1, int quiet=1)
Example
fetch 1ubq, async=0
print(cmd.get_fastastr('all'))
>1ubq MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV LRLRGG