Get object matrix: Difference between revisions
Jump to navigation
Jump to search
Cowsandmilk (talk | contribs) (Created page with '=Overview= Pymol stores a transformation matrix for each object relative to it's initial position when loaded in. '''get_object_matrix''' will return a list of floats with that …') |
No edit summary |
||
| (One intermediate revision by one other user not shown) | |||
| Line 2: | Line 2: | ||
Pymol stores a transformation matrix for each object relative to it's initial position when loaded in. '''get_object_matrix''' will return a list of floats with that matrix for a named object. | Pymol stores a transformation matrix for each object relative to it's initial position when loaded in. '''get_object_matrix''' will return a list of floats with that matrix for a named object. | ||
The matrix is 4X4, with the upper left 3x3 forming a rotation matrix, the fourth column and row representing pre- and post-translation vectors respectively, and the 16th element always being 1.0. | The matrix is 4X4, with the upper left 3x3 forming a rotation matrix, the fourth column and row representing pre-rotation and post-rotation translation vectors respectively, and the 16th element always being 1.0. | ||
According the pymol source code, this is an "unsupported command". | According the pymol source code, this is an "unsupported command". | ||
| Line 20: | Line 20: | ||
== See Also == | == See Also == | ||
[[Transform_selection]] [[Transform_odb]] [[Matrix_copy]] | [[Object_Matrix]] [[Transform_selection]] [[Transform_odb]] [[Matrix_copy]] | ||
[[Category:Commands|Get Object Matrix]] | [[Category:Commands|Get Object Matrix]] | ||
Latest revision as of 06:08, 7 September 2010
Overview
Pymol stores a transformation matrix for each object relative to it's initial position when loaded in. get_object_matrix will return a list of floats with that matrix for a named object.
The matrix is 4X4, with the upper left 3x3 forming a rotation matrix, the fourth column and row representing pre-rotation and post-rotation translation vectors respectively, and the 16th element always being 1.0.
According the pymol source code, this is an "unsupported command".
Syntax
cmd.get_object_matrix(object, state=1)
Example
cmd.load("prot1.pdb", "prot1")
cmd.load("prot2.pdb", "prot2")
cmd.super("prot1", "prot2") #align prot1 to prot 2
transformation = cmd.get_object_matrix("prot1") #translation and rotation to align the two proteins