User talk:Mglerner: Difference between revisions
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[[User:Inchoate|Tree]] 15:54, 1 December 2009 (UTC) | [[User:Inchoate|Tree]] 15:54, 1 December 2009 (UTC) | ||
: cool!--[[User:Mglerner|-michael]] 16:20, 1 December 2009 (UTC) | : cool!--[[User:Mglerner|-michael]] 16:20, 1 December 2009 (UTC) | ||
Problem with Tools2 | |||
Hi Mike, | |||
Trying your new APBS tools2 plugin. First I noticed that the isopotential surface it creates with the same PDB and PQR is different to that produced from APBS original version. Second, when I tried to raytrace a usual scene with a protein cartoon with two isopotential surfaces, it processed for 20% and then crashed, complaining about a python error. The original APBS tools does not crash. I am using Pymol 1.2r3 for windows (vista). Anyway thanks for making such a nice tools. | |||
Wai | |||
Hi Wai, | |||
Can you give me an example PDB/PQR file to reproduce the discrepancies you're seeing with isopotential surfaces? | |||
Latest revision as of 13:27, 16 June 2010
Michael,
Check out Fetch_Path for a cool setting. I don't use load much now b/c of this.
Tree 15:54, 1 December 2009 (UTC)
- cool!---michael 16:20, 1 December 2009 (UTC)
Problem with Tools2
Hi Mike,
Trying your new APBS tools2 plugin. First I noticed that the isopotential surface it creates with the same PDB and PQR is different to that produced from APBS original version. Second, when I tried to raytrace a usual scene with a protein cartoon with two isopotential surfaces, it processed for 20% and then crashed, complaining about a python error. The original APBS tools does not crash. I am using Pymol 1.2r3 for windows (vista). Anyway thanks for making such a nice tools.
Wai
Hi Wai,
Can you give me an example PDB/PQR file to reproduce the discrepancies you're seeing with isopotential surfaces?