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=== Algorithm Details === | === Algorithm Details === | ||
'''super''' does a | '''super''' does a sequence-independent structure-based dynamic programming alignment followed by a series of refinement cycles intended to improve the fit by eliminating pairing with high relative variability (e.g. >2 standard deviations from the cycle's mean deviance). | ||
== Caveats == | == Caveats == | ||
Revision as of 14:06, 30 September 2009
Overview
super aligns two selections. super is more robust and accurate than align. For syntax, see align.
Algorithm Details
super does a sequence-independent structure-based dynamic programming alignment followed by a series of refinement cycles intended to improve the fit by eliminating pairing with high relative variability (e.g. >2 standard deviations from the cycle's mean deviance).
Caveats
- If super ever tells you no matched atoms, then instead of
super p1, p2
try
super p1 & alt A+'', p2 & alt B+''