Main Page: Difference between revisions

Revision as of 14:48, 28 July 2008

Welcome to the PyMOL Wiki
We are the community-based support site for the popular molecular visualization program, PyMOL.

New Users
New users are encouraged to join. Feel free to add any appropriate content; make an account and get started!

Quick Links
Table of Contents	Index of all pages	PyMOL Cheat Sheet: PDF Wiki Page
Tutorials	Commands	Settings: All Documented
Script Library	Plugins	See All Categories
Frequently Asked Questions	Gallery	About PyMOL

News and Updates (archive)

Wiki
♦ Downtime: The PyMOLWiki underwent some downtime due to FS problems. There are also upgrades planned for this week, so we may expect a little downtime for that. We've been very fortunate to have hosting from BitGnome.Net; they've done an incredible job!
♦ Gallery -- Did you make a cool image? Pop it into the PyMOLWiki Gallery with the PyMOL command you used. Looking for a particular representation--start here (new!).
♦ Google Analytics cookies/tracking added to the wiki. We're just doing hit counts and watching what people do so we can improve the wiki.
♦ PyMOL Cheat Sheet (reference card) has been donated. It's also posted in the table above for quick access.
♦ Google Summer of Code 2008 for PyMOL has been created. Update: PyMOL wasn't chosen, so this page is now about ideas for improving PyMOL.
♦ Added a special category/section for active PyMOL Tutorials. These are pages not just with information, but easy to understand, step-by-step pages from which to learn.

Screenshot of the donated PyMOL reference card.

PyMOL
♦ group command has been added.
♦ The truly awesome grid_mode setting has been added.
♦ Ellipsoids representation added for drawing thermal ellipsoids.

Screenshot of Grid Mode in action.

Scripts & Plugins
♦ ImmersiveViz -- Headtracking user interface for PyMOL (watch the video)!
♦ Colorama --a PyMOL plugin which allows to color objects using adjustable scale bars
♦ ProMOL plugin added. Catalytic site prediction, other tools. Redirects to website.
♦ EMovie plugin added. Easy movies in PyMol using a GUI.
♦ DYNMAP plugin page created. Check it out!
♦ EZ-Viz

Screenshot of Colorama.

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+| style="padding: 3px 5px 10px 15px;"| &diams; Downtime: The PyMOLWiki underwent some downtime due to FS problems.  There are also upgrades planned for this week, so we may expect a little downtime for that.  We've been <b>very</b> fortunate to have hosting from [http://www.bitgnome.net/ BitGnome.Net]; they've done an incredible job!
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 | style="padding: 3px 5px 10px 15px;"| &diams; [[Gallery]] -- Did you make a [[:Image:Ccp4_map.png|cool image]]?  Pop it into the PyMOLWiki Gallery with the PyMOL command you used.  Looking for a particular representation--start here (new!).