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(Major changes to the style of the home page. Used much more horizontal space. If it's b0rked on your browser, please comment.)
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<br>
__NOTOC__
* [[TOPTOC|'''Table of Contents''']]
{| align="center"
* [[Special:Allpages|Alphabetized Index of all pages]]
|+ style="width: 90%; font-size:190%; font-weight: bold; color:#038; text-align:center; padding: 5px; margin-bottom: 15px" | Welcome to the PyMOL Wiki
|- style="text-align:center; font-weight:bold; color: #333; font-size: 120%"
| We are the community-based support site for the popular molecular visualization program, [http://pymol.sf.net PyMOL].
|-
|}


<br>


== Welcome to the PyMOL Wiki ==
{| align="center" style="width:90%; margin-bottom: 20px"
You have reached the home of the PyMolWiki, a user-driven web-oriented CMS supporting the open source molecular visualization program, [http://pymol.sf.net PyMOL].
|
{| align="left" width="20%" style="border: 1px solid #333; text-align:center; height=100%;"
! style="font-weight: bold; font-size:120%; color: #333; background:#80AFFF;" | New Users
|-
| style="background:#E6EFFF; color:#333; font-size: 110%"| New users are encouraged to join. Feel free to add any appropriate content; make an account and get started!
|-
|}
{| align="right" width="75%" style="border: 1px solid #333; text-align:left;"
! colspan="3" style="font-weight: bold; font-size:120%; color: #333; background:#80AFFF; text-align:center" | Quick Links
|-
| [[TOPTOC|'''Table of Contents''']]
|| [[Special:Allpages|Index of all pages]]
|| [http://pymol.sf.net PyMOL] Homepage
|-
| [[Practical_Pymol_for_Beginners|Beginner's Tutorial]]
|| [[:Category:Commands|PyMol Commands]]
|| '''Settings''': [[Settings|All]] [[:Category:Settings|Documentented]]
|-
| [[:Category:Script_Library|'''Script Library''']]
|| [[:Category:Plugins|'''Plugins''']]
|| [[:Special:Categories| See All Categories]]
|-
| [[:Category:FAQ|Frequently Asked Questions]]
|| [[PyMolWiki:Community_Portal|'''How to get involved!''']]
||
|-
|}
|
|}


We provide
{| align="center" width="90%" style="background: #fafafa; border-right: 1px solid #333; border-left: 1px solid #333; border-bottom: 1px solid #333"
* Updates on [http://pymol.sf.net PyMOL]
|+ style="text-align: left; font-weight:bold; font-size:150%; color:#333; background: #EFE6FF; padding:10px; border: 1px solid #333" | News and Updates ([[Older_News|archive]])
* User-maintained documentation
! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px" | Wiki
** [[Practical_Pymol_for_Beginners|Beginner's Tutorial]]
|-
* PyMOL Scripts
| style="padding: 3px 5px 10px 15px;"| &diams; Rather large changes to the style of the main page.  Hopefully this will transition into something more pleasing.
** [[:Category:Script_Library|feature-rich scripts]] for general PyMol use
|-
 
| style="padding: 3px 5px 10px 15px;"| &diams; We need experienced PyMOL users to link pages to their respective categories and make new categories.  Some new categories that need to be filled: [[:Category:Settings]], [[:Category:Publication_Quality]], [[:Category:Image_Manipulation]], [[:Category:Nucleic_Acids]].  We also need a category -- or categories -- on biochemical analysis and other useful things we do in PyMOL.  This will help people expand their knowledge (by being able to see related issues), and make it easier for the power users to find what they need.  The editing is '''very simple''' -- all you do is add a category tag(s) at the end of the pages.
== New Users ==
|-
Welcome!  New users who wish to contribute appropriate content are welcome to join.  Feel free to add any appropriate content; make an account and get started!
| style="padding: 3px 5px 10px 15px;"| &diams;  We also need folks to link to the pages in the [[Special:Lonelypages|Orphaned Pages]].  These pages are only found by direct searching, so we should change that to help make this more usable.
 
|-
==News ([[Older_News|archive]])==
! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px" | PyMOL
 
|-
===Wiki===
| style="padding: 3px 5px 10px 15px;"| &diams; PyMOL 1.0 has been released!
* <big>'''Help requested:'''</big>
|-
**We need experienced PyMOL users to link pages to their respective categories and make new categories.  Some new categories that need to be filled: [[:Category:Settings]], [[:Category:Publication_Quality]], [[:Category:Image_Manipulation]], [[:Category:Nucleic_Acids]].  We also need a category -- or categories -- on biochemical analysis and other useful things we do in PyMOL.  This will help people expand their knowledge (by being able to see related issues), and make it easier for the power users to find what they need.  The editing is '''very simple''' -- all you do is add a category tag(s) at the end of the pages.
| style="padding: 3px 5px 10px 15px;"| &diams; [http://delsci.info/dsc/ PyMOL Official Documentation] is also available for subscribers.
**We also need folks to link to the pages in the [[Special:Lonelypages|Orphaned Pages]].  These pages are only found by direct searching, so we should change that to help make this more usable.
|-
** We need a new PyMOLWiki logo.  Submit them to the wiki for general viewing.
! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px" | Scripts &amp; Plugins
 
|-
* Many search terms were missing due to normal pages acting as category pages.  Now searches for '''mencoder''', and '''publication quality images''' should now result in non-empty matches.  This should make finding things on the PyMOLWiki much easier.
| style="padding: 3px 5px 10px 15px;"| &diams; [[Colorama]] --a PyMOL plugin which allows to color objects using adjustable scale bars
 
|-
===PyMOL===
| style="padding: 3px 5px 10px 15px;"| &diams; [http://ase-web.rit.edu/~ez-viz/ProMOL_dl.html ProMOL] plugin added.  Catalytic site prediction, other tools.  Redirects to website.
* PyMOL 1.0 is out!
|-
* [http://delsci.info/dsc/ PyMOL Official Documentation] is also available for subscribers.
| style="padding: 3px 5px 10px 15px;"| &diams; [[EMovie]] plugin added.  Easy movies in PyMol using a GUI.
 
|-
===Plugins/Scripts===
| style="padding: 3px 5px 10px 15px;"| &diams; [[DYNMAP]] plugin page created.  Check it out!
* [[Colorama]] --a PyMOL plugin which allows to color objects using adjustable scale bars
|-
* [http://ase-web.rit.edu/~ez-viz/ProMOL_dl.html ProMOL] plugin added.  Catalytic site prediction, other tools.  Redirects to website.
| style="padding: 3px 5px 10px 15px;"| &diams; [[EZ-Viz]]
* [[EMovie]] plugin added.  Easy movies in PyMol using a GUI.
|}
* [[DYNMAP]] plugin page created.  Check it out!
* [[EZ-Viz]]
 
== Links of Interest ==
* [[TOPTOC|Top Level Table of Contents]]
* [[:Category:FAQ|Frequently Asked Questions]]
* [[PyMolWiki:Community_Portal| How to get involved!]]
* [[:Category:Script Library| Script Library]]
* [[:Category:Commands|PyMol Commands]]
* '''Settings''': [[Settings|All]] [[:Category:Settings|Documentented]]
* [[:Special:Allpages| All Pages]]
* [[:Category:Plugins|Plugins]]
* [[:Special:Categories| See All Categories]]

Revision as of 03:01, 9 December 2007

Welcome to the PyMOL Wiki
We are the community-based support site for the popular molecular visualization program, PyMOL.


New Users
New users are encouraged to join. Feel free to add any appropriate content; make an account and get started!
Quick Links
Table of Contents Index of all pages PyMOL Homepage
Beginner's Tutorial PyMol Commands Settings: All Documentented
Script Library Plugins See All Categories
Frequently Asked Questions How to get involved!
News and Updates (archive)
Wiki
♦ Rather large changes to the style of the main page. Hopefully this will transition into something more pleasing.
♦ We need experienced PyMOL users to link pages to their respective categories and make new categories. Some new categories that need to be filled: Category:Settings, Category:Publication_Quality, Category:Image_Manipulation, Category:Nucleic_Acids. We also need a category -- or categories -- on biochemical analysis and other useful things we do in PyMOL. This will help people expand their knowledge (by being able to see related issues), and make it easier for the power users to find what they need. The editing is very simple -- all you do is add a category tag(s) at the end of the pages.
♦ We also need folks to link to the pages in the Orphaned Pages. These pages are only found by direct searching, so we should change that to help make this more usable.
PyMOL
♦ PyMOL 1.0 has been released!
♦ PyMOL Official Documentation is also available for subscribers.
Scripts & Plugins
♦ Colorama --a PyMOL plugin which allows to color objects using adjustable scale bars
♦ ProMOL plugin added. Catalytic site prediction, other tools. Redirects to website.
♦ EMovie plugin added. Easy movies in PyMol using a GUI.
♦ DYNMAP plugin page created. Check it out!
♦ EZ-Viz
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