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<br> | |||
* [[TOPTOC|'''Table of Contents''']] | |||
* [[Special:Allpages|Alphabetized Index of all pages]] | |||
* [[Improvements|Discussion of PyMolWiki Improvements]] | |||
<br> | |||
== PyMol Wiki Home == | |||
You have reached the home of the PyMolWiki, a user-driven web-oriented CMS. | |||
We provide | |||
* updates on [http://pymol.sf.net PyMol] | |||
* a stable user-oriented documentation base | |||
* a thorough treatment of the PyMol program | |||
* feature-rich scripts for general PyMol use | |||
http:// | == New Users == | ||
Welcome! New users who wish to contribute appropriate content are welcome to join. Feel free to add any appropriate content; make an account and get started! | |||
==News== | |||
===PyMol=== | |||
* Important bug fixed in [[Cealign|CE Align v0.5]] and [[Kabsch]]. Both updated. | |||
* [[Cealign|CE Align v0.4]], code now available. See the [[Cealign]] page for changes. | |||
* [[Cealign|CE Align v0.1]], code now available. Windows installer coming soon. | |||
* [[Slerpy]], a set of pymol command extensions to simplify complex movie making is now available. | |||
* Updated the [[Kabsch#The_New_Code|Kabsch]] code with a more elegant solution; fixed a small rotation bug. | |||
* Pymol 0.99 is out! Get it [http://delsci.com/rel/099/ here]. | |||
* A new version of APBS plugin is available on [http://www-personal.umich.edu/~mlerner/PyMOL/ Michael Lerner's Page]. | |||
* New [http://www.delsci.com/beta Beta Releases] available. | |||
* New cool [[ray]] tracing features added! | |||
===Wiki=== | |||
* Added useful mini-script for re-assigning the B Factor column to something new and coloring it. | |||
* captcha system installed. | |||
* If you notice something out of the ordinary, please contact the admin. I updated some software. | |||
* [[Settings]] now contains documentation on: | |||
- helix roundness | |||
- ribbon sampling | |||
- cartoon sampling | |||
- cartoon highlight coloring | |||
- cartoon color blending vs discrete colors | |||
- and more! now 48 documented (with examples); just 470 to go.... | |||
* [[SURFNET]] information on reading surfaces from other programs added. | |||
* Two new [[:Category:Plugins|Plugins]] have been added, [[NsSNP Loader]] and [[Proxy Config]]. | |||
* Added a page that lists all [[Settings|PyMol settings]]. We need to start documenting these. | |||
* [[MAC_Install]] page has been developed. It describes pymol and apbs issues specific to Mac OS X. | |||
* [[APBS]] page has been established. | |||
* [[APBS]] How to set this up on OS X and on Linux has been started but needs contributions. | |||
===News Archive=== | |||
*See our [[Older_News]]. | |||
== Links of Interest == | |||
* [[TOPTOC|Top Level Table of Contents]] | |||
* [[:Category:FAQ|Frequently Asked Questions]] -- new! | |||
* [[PyMolWiki:Community_Portal| How to get involved!]] -- read me if you want to add something | |||
* [[:Category:Script Library| Script Library]] -- add one! (rTools info!) | |||
* [[:Category:Commands|PyMol Commands]] (>130 documented!) | |||
* [[Settings|PyMol Settings]] (6 newly documented; only 470 to go...) | |||
* [[:Special:Allpages| All Pages]] | |||
* [[:Category:Plugins|Plugins]] | |||
* [[:Special:Categories| See All Categories]] | |||
Revision as of 06:20, 12 March 2007
PyMol Wiki Home
You have reached the home of the PyMolWiki, a user-driven web-oriented CMS.
We provide
- updates on PyMol
- a stable user-oriented documentation base
- a thorough treatment of the PyMol program
- feature-rich scripts for general PyMol use
New Users
Welcome! New users who wish to contribute appropriate content are welcome to join. Feel free to add any appropriate content; make an account and get started!
News
PyMol
- Important bug fixed in CE Align v0.5 and Kabsch. Both updated.
- CE Align v0.4, code now available. See the Cealign page for changes.
- CE Align v0.1, code now available. Windows installer coming soon.
- Slerpy, a set of pymol command extensions to simplify complex movie making is now available.
- Updated the Kabsch code with a more elegant solution; fixed a small rotation bug.
- Pymol 0.99 is out! Get it here.
- A new version of APBS plugin is available on Michael Lerner's Page.
- New Beta Releases available.
- New cool ray tracing features added!
Wiki
- Added useful mini-script for re-assigning the B Factor column to something new and coloring it.
- captcha system installed.
- If you notice something out of the ordinary, please contact the admin. I updated some software.
- Settings now contains documentation on:
- helix roundness
- ribbon sampling
- cartoon sampling
- cartoon highlight coloring
- cartoon color blending vs discrete colors
- and more! now 48 documented (with examples); just 470 to go....
- SURFNET information on reading surfaces from other programs added.
- Two new Plugins have been added, NsSNP Loader and Proxy Config.
- Added a page that lists all PyMol settings. We need to start documenting these.
- MAC_Install page has been developed. It describes pymol and apbs issues specific to Mac OS X.
- APBS page has been established.
- APBS How to set this up on OS X and on Linux has been started but needs contributions.
News Archive
- See our Older_News.
Links of Interest
- Top Level Table of Contents
- Frequently Asked Questions -- new!
- How to get involved! -- read me if you want to add something
- Script Library -- add one! (rTools info!)
- PyMol Commands (>130 documented!)
- PyMol Settings (6 newly documented; only 470 to go...)
- All Pages
- Plugins
- See All Categories