User talk:Tmwsiy: Difference between revisions

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Sorry about that its: http://dwkulp.homelinux.net/tiki/tiki-index.php


http://dwkulp.homelinux.net/tiki-index.php


Is a 404.  You may want to double check it.
== Kabsch ==


-- Jason
Dan,


== Talk Pages ==
I'm not sure what you're asking.  But, if I'm correct both interpreting what you're thinking and the math, then yes.  To do so, just append the CB list to the CA list for each protein respectively and align.


Dan,
If you have CA and CB from two proteins, you can align all CAs to CAs and all CBs to CBs.  All you have to do is to figure out how to tell the alg to do it.


Yeah, I think these talk pages are similar to public messages to folks. Also, every page has a discussion page -- so you can talk about the page under question. WikiPedia does this quite a bit in case there are disputes to content: is someone being spiteful and posting bunk, or is the content controversial or whatnot. Here, I imagine it'll be, "how do I..." type questions.
This should do the trick:
  optAlign proteinA and ((n. CA and i. 4+5+10+22) or (n. CB and i. 5+10+15+20)), proteinB and ((n. CA and i. 1-4)or (n. CB and i. 30+31+35+49))


[[User:Tree|Tree]] 16:11, 12 May 2005 (CDT)
If it works, let me know -- drop off an image or something.  GL.

Latest revision as of 12:30, 30 August 2005


Kabsch

Dan,

I'm not sure what you're asking. But, if I'm correct both interpreting what you're thinking and the math, then yes. To do so, just append the CB list to the CA list for each protein respectively and align.

If you have CA and CB from two proteins, you can align all CAs to CAs and all CBs to CBs. All you have to do is to figure out how to tell the alg to do it.

This should do the trick: 

optAlign proteinA and ((n. CA and i. 4+5+10+22) or (n. CB and i. 5+10+15+20)), proteinB and ((n. CA and i. 1-4)or (n. CB and i. 30+31+35+49))

If it works, let me know -- drop off an image or something. GL.

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