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==Alter key bindings== | ==Alter key bindings== | ||
It's not GUI, but you could simply bind a function key such as F1 to a command: | It's not GUI, but you could simply bind a function key such as F1 to a command: | ||
| Line 15: | Line 14: | ||
set surface_color, level, molecule | set surface_color, level, molecule | ||
</source> | </source> | ||
==Van der Waals radii== | |||
van der Waals Radii are hard coded in Pymol. | |||
They may be obtained for given atoms from: | |||
<source lang="python"> | |||
iterate (name C), print vdw | |||
</source> | |||
Default values are: | |||
*C : 1.70 | |||
*O : 1.52 | |||
*N : 1.55 | |||
*H : 1.20 | |||
*P : 1.80 | |||
and may be changed with the command alter | |||
Revision as of 03:55, 16 January 2007
Alter key bindings
It's not GUI, but you could simply bind a function key such as F1 to a command:
cmd.set_key('F1',lambda :cmd.show('sticks'))
Coloring Surface with Electrostatic Potential
You have to load the potential data by Delphi or some other program like AMBER version 9:
load sample.pdb, molecule
load sample.delphi, potential
show surface, molecule
ramp_new level, potential, [-7,0,7]
set surface_color, level, molecule
Van der Waals radii
van der Waals Radii are hard coded in Pymol. They may be obtained for given atoms from:
iterate (name C), print vdw
Default values are:
- C : 1.70
- O : 1.52
- N : 1.55
- H : 1.20
- P : 1.80
and may be changed with the command alter
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