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(PyMOL 3.0 release)
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|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
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! Official Release
| [https://pymol.org PyMOL v3.0 has been released] on March 12, 2024.
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! New Plugin
! New Plugin

Revision as of 12:54, 12 March 2024

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v3.0 has been released on March 12, 2024.
New Plugin CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellowship announced for 2022-2023
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Fab

fab builds peptide entities from sequence. The sequence must be specified in one-letter code. Several fragments will be created if the sequence contains spaces (chain breaks). To specify chain-id and residue number, an advanced syntax pattern like chain/resi/ can be put before each sequence fragment.

Similar functionality is also provided by the graphical Builder in "Protein" mode.

New in PyMOL version 1.2

USAGE

fab input [, name [, mode [, resi [, chain [, segi [, state [, dir [, hydro [, ss [, async ]]]]]]]]]]

ARGUMENTS

  • input = string: Amino acid sequence in one-letter code
  • name = string: name of object to create or modify {default: obj??}
  • mode = string: Only supported mode is "peptide" {default: peptide}
  • resi = integer: Residue number to start numbering from {default: 1}
  • chain, segi = string: Chain id and segment id to assign
  • state = integer: {default: -1}
  • dir = 0/1: 0=append to N-terminus, 1=append to C-terminus {default: 1}
  • hydro = 0/1: With or without hydrogens ..→
A Random PyMOL-generated Cover. See Covers.