Difference between revisions of "Main Page"

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! Official Release
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| [https://pymol.org PyMOL v2.4 has been released] on May 20, 2020.
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| [https://pymol.org PyMOL v3.0 has been released] on March 12, 2024.
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! New Plugin
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| [[CavitOmiX|CavitOmiX]] calculate [https://innophore.com Catalophore™ cavities], predict protein structures with [https://www.nvidia.com/en-us/gpu-cloud/bionemo OpenFold by NVIDIA-BioNeMo], [https://ai.facebook.com/blog/protein-folding-esmfold-metagenomics/ ESMFold] and retrieve [https://www.deepmind.com/research/highlighted-research/alphafold Alphafold] models
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| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
 
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! Python 3
 
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| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
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| [https://pymol.org PyMOL v2.3 has been released] on February 11, 2019.
 
 
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! POSF
 
! POSF
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| [https://pymol.org/fellowship New PyMOL fellows announced for 2018-2019]
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| [https://pymol.org/fellowship New PyMOL fellowship announced for 2022-2023]
 
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| [[ProBiS_H2O|ProBiS H2O]] is a new plugin for identification of conserved waters in protein structures.
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| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
 
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! Selection keywords
 
! Selection keywords

Latest revision as of 12:54, 12 March 2024

hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v3.0 has been released on March 12, 2024.
New Plugin CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellowship announced for 2022-2023
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Python

Issuing the Python command will put you into a stateful pseudo-interactive Python session. Or, more simply it's stateful in that you can invoke the Python session write some code, end the session, then restart the session and your data will be saved (see Example 1). It's pseudo-interactive in that you don't get feedback until you type "python end," upon which your code is run the output appears.

This is a helpful command for testing different scripting or state-editing strategies for movie making.

USAGE

# start the session
python

# ...
# your Python code goes here
# ...

# end the session
python end


EXAMPLES

  • Start the session. Set x to 10. End the session. Restart the session and see if the value of x is recalled.
python
x = 10
print(x)
python end

python
print(x)
python end

Output: 

10

Python Version

Python scripts and commands used within PyMOL can only be written using the current version of ..→

A Random PyMOL-generated Cover. See Covers.


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