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Latest revision as of 11:54, 12 March 2024

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News & Updates
Official Release	PyMOL v3.0 has been released on March 12, 2024.
New Plugin	CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models
Official Release	PyMOL v2.5 has been released on May 10, 2021.
Python 3	New Python 3 compatibility guide for scripts and plugins
POSF	New PyMOL fellowship announced for 2022-2023
Tutorial	Plugins Tutorial updated for PyQt5
New Plugin	PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords	New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update	MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script	dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News	See Older News.

Did you know...
Split Object Along Axis == Overview == I have a number of small molecules that I am looking at. Many of these small molecules have distinct sections which are connected by a single bond. In a separate program I am writing, I would like to rotate each section around the given bond. I wanted a script that would allow me to select a bond, and then generate 2 selections: one for the selection of all atoms that are on one side of this bond, and the other selection for the atoms on the other side of the bond. If there is a 2nd bond which connects the 2 sections of atoms, the script will still run and terminate, but the two selections won't make much sense! To use, just call splitObjAlongAxis(axisSelection, outFileName) where: axisSelection is a selection that includes 2 atoms. These atoms define the axis which we are splitting across. outFileName is an optional file name where the script will spit three lines. The first line will be the two atom id's of the axis. The second line will be a list of atom id's in the selection generated, and the third line ..→

A Random PyMOL-generated Cover. See Covers.

@@ Line 30: / Line 30: @@
 |-
 ! Official Release
-| [https://pymol.org PyMOL v2.3 has been released] on February 11, 2019.
+| [https://pymol.org PyMOL v3.0 has been released] on March 12, 2024.
+|-
+! New Plugin
+| [[CavitOmiX|CavitOmiX]] calculate [https://innophore.com Catalophore™ cavities], predict protein structures with [https://www.nvidia.com/en-us/gpu-cloud/bionemo OpenFold by NVIDIA-BioNeMo], [https://ai.facebook.com/blog/protein-folding-esmfold-metagenomics/ ESMFold] and retrieve [https://www.deepmind.com/research/highlighted-research/alphafold Alphafold] models
+|-
+! Official Release
+| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
+|-
+! Python 3
+| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
 |-
 ! POSF
-| [https://pymol.org/fellowship New PyMOL fellows announced for 2018-2019]
+| [https://pymol.org/fellowship New PyMOL fellowship announced for 2022-2023]
 |-
 ! Tutorial
@@ Line 39: / Line 48: @@
 |-
 ! New Plugin
-| [[ProBiS_H2O|ProBiS H2O]] is a new plugin for identification of conserved waters in protein structures.
+| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
 |-
 ! Selection keywords