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News & Updates New Plugin CavitOmiX calculate Catalophore™ Cavities, predict protein structures with OpenFold by NVIDEA-BioNeMo, ESMFold and retrieve Alphafold models Official Release PyMOL v2.5 has been released on May 10, 2021. Python 3 New Python 3 compatibility guide for scripts and plugins POSF New PyMOL fellowship announced for 2022-2023 Tutorial Plugins Tutorial updated for PyQt5 New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll! Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons Older News See Older News.

Did you know... AAindex Type Python Script Download scripts/aaindex.py Author(s) Thomas Holder License BSD This code has been put under version control in the project Pymol-script-repo Included in psico This command or function is available from psico, which is a PyMOL extension. Module psico.aaindex Introduction Hydrophobicity coloring with KYTJ820101 AAindex is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids. See http://www.genome.jp/aaindex/ This script is a python parser for the AAindex flat files which will be downloaded from ftp://ftp.genome.jp/pub/db/community/aaindex/ The script provides two PyMOL commands (but can also be used without PyMOL). aaindex2b: Loads numerical indices from aaindex1 as b-factors into your structure pmf: Potential of Mean Force (aaindex3) Python Example Consider the script is called aaindex.py, it is placed somewhere in your PYTHONPATH and the aaindex flatfiles are found in the current directory. <source lang="python"> import aaindex aaindex.init(path='.') aai ..→

A Random PyMOL-generated Cover. See Covers.