Main Page

hosted by

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

To request a new account, email SBGrid at: accounts (@) sbgrid dot org

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates Official Release PyMOL v2.5 has been released on May 10, 2021. Python 3 New Python 3 compatibility guide for scripts and plugins POSF New PyMOL fellowship announced for 2022-2023 Tutorial Plugins Tutorial updated for PyQt5 New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll! Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons Older News See Older News.

Did you know... Rotkit Type Python Script Download rotkit.py Author(s) Troels E. Linnet License BSD This code has been put under version control in the project Pymol-script-repo Introduction This script-kit is a collection of small script to be able to precisely to put a molecule (like a dye) where you want in relation to a protein. You can also create rotational states of a domain or simulate a dye freedom. It simply makes the PyMOL TTT matrixes, in a easy and user friendly way. The calls to the functions available in PyMOL, takes care of all the conversion of input and such. If you are interested in this, you might also want to check out the PyMOL Chempy module that is included in PyMOL. It provides handy vector and matrix functions. Functions available in PyMOL rotateline(Pos1,Pos2,degangle,molecule): "Pos1->Pos2" define a line whereabout "molecule" will be rotated "degangle" degrees rotateline Pos1=P513C_CA, Pos2=P513C_CB, degangle=5, molecule=Atto590 rotateline Pos1=dyeatom87, Pos2=dyeatom85, degangle=10, ..→

A Random PyMOL-generated Cover. See Covers.