Get fastastr: Difference between revisions
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(Created page with "== cmd.get_fastastr == Do you have a pdb file which come from a modelling program?<br> Are you unsure about which amino sequence is in the "long" pdb file? What you really want...") |
(Nucleic acid support) |
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[[get_fastastr]] is an API-only function which returns the one-letter amino acid sequence in FASTA format. | |||
''Changed in PyMOL 2.2: Sequences per chain'' | |||
''Changed in PyMOL 2.2: Nucleic acid support'' | |||
== PyMOL API == | |||
<syntaxhighlight lang="python"> | |||
cmd.get_fastastr(string selection='all', int state=-1, int quiet=1) | |||
</syntaxhighlight> | |||
== Example == | |||
<syntaxhighlight lang="python"> | |||
fetch 1ubq, async=0 | |||
print(cmd.get_fastastr('all')) | |||
</syntaxhighlight> | |||
>1ubq | |||
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV | |||
LRLRGG | |||
== See Also == | |||
* [[Aa codes]] | |||
Latest revision as of 12:49, 30 July 2020
get_fastastr is an API-only function which returns the one-letter amino acid sequence in FASTA format.
Changed in PyMOL 2.2: Sequences per chain
Changed in PyMOL 2.2: Nucleic acid support
PyMOL API
cmd.get_fastastr(string selection='all', int state=-1, int quiet=1)
Example
fetch 1ubq, async=0
print(cmd.get_fastastr('all'))
>1ubq MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV LRLRGG