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News & Updates PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... Lines Lines is name of the basic representation for atoms and bonds in PyMOL. Lines is a very simple representation, where each atom bond is displayed as a single colored line, and each atom is displayed as the intersection of any two or more non-terminal bonds. Usage # show everything as lines show lines # only show residues 50-80 as lines show lines, i.50-80 Examples Example: Displaying dashed lines between two atoms The following commands will create a dashed line between two atoms. # first, create two named selections select a, ///A/501/02 select b, ///B/229/N # calculate & show the distance from selection a to selection b. distance d, a, b # hide just the distance labels; the # dashed bars should still be shown hide labels, d Technically, the object d is a labelled distance, only the label is hidden. When ray-tracing the image, the dashes come out a bit fat. You can slim them with <source lang="python"> set dash_gap, 0.5 set ..→

A Random PyMOL-generated Cover. See Covers.