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News & Updates PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014. Official Release PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS. New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL. New Script cgo_arrow draws an arrow between two picked atoms. Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL. Older News See Older News.

Did you know... Distancetoatom Type Python Module Download distancetoatom.py Author(s) Andreas Warnecke and Jared Sampson License BSD-2-Clause This code has been put under version control in the project Pymol-script-repo About distancetoatom distancetoatom prints all distances between a specified atom, coordinate or group selection center and all atoms within cutoff distance that are part of the selection. All coordinates and distances can be saved in a csv-style text file report and/or can be stored in a (custom) atom property, if defined. For instruction on setting up plugin import see Git intro or Plugin Manager Usage distancetoatom [ origin [, cutoff [, filename [, selection [, state [, property_name [, coordinates [, decimals [, sort [, quiet ]]]]]]]]]] Arguments ..→

A Random PyMOL-generated Cover. See Covers.