Nucleic Acid Sequence: Difference between revisions
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== Building a Nucleic Acid Sequence From Hand == | == Building a Nucleic Acid Sequence From Hand == | ||
At the time of this writing, there is no known method by which to build nucleic acid sequences in PyMol. That being said, you can however use third party software to get the job done in PyMol. Check out these programs: | At the time of this writing, there is no known method by which to build nucleic acid sequences in PyMol. | ||
That being said, you can however use third party software to get the job done in PyMol. | |||
Check out these programs: | |||
# [http://x3dna.org 3DNA] | |||
# [http://www.scripps.edu/mb/case/Biomer/ B (aka "Biomer")] | # [http://www.scripps.edu/mb/case/Biomer/ B (aka "Biomer")] | ||
# [http://namot.lanl.gov/ NAMOT] | # [http://namot.lanl.gov/ NAMOT] | ||
# Enter sequence into web interface and get a pdb file back: http://structure.usc.edu/make-na/ | # Enter sequence into web interface and get a pdb file back: http://structure.usc.edu/make-na/ | ||
# Select A-DNA,B-DNA, then enter sequence into web interface and get a pdb file back: http://w3dna.rutgers.edu/rebuild/fiberch | |||
Revision as of 01:49, 22 May 2012
Building a Nucleic Acid Sequence From Hand
At the time of this writing, there is no known method by which to build nucleic acid sequences in PyMol. That being said, you can however use third party software to get the job done in PyMol.
Check out these programs:
- 3DNA
- B (aka "Biomer")
- NAMOT
- Enter sequence into web interface and get a pdb file back: http://structure.usc.edu/make-na/
- Select A-DNA,B-DNA, then enter sequence into web interface and get a pdb file back: http://w3dna.rutgers.edu/rebuild/fiberch