View source for 1. Importing a PyMol Structure into Blender

* '''Step 1'''
Load the PDB file 3IQS into PyMOL. Rename the model to "3IQS_cartoon", hide everything and show the cartoon.

[[Image:Scr02.png|center|350px]]

* '''Step 2'''
Save the displayed "3IQS_cartoon" as a VRML file, as shown below:

[[Image:Scr03.png|center|350px]]

* '''Step 3'''
Launch Blender (please see link in the Introduction to download and install). Assuming you are looking at the default scene and window layout, press '''7''' on '''numeric keypad''' and the view should change similar to the one below:

[[Image:Scr05.png|center|350px]]

*''' Step 4'''
Now select the '''cube''' in the center of the screen by '''right clicking''' on it, then pressing '''x''' and '''Enter''' to delete it. This will give you a clean scene to import the protein structure you just exported from PyMOL as VRML 2 (.wrl).

* '''Step 5'''
Now import the "3IQS_cartoon" into Blender by going to "File > Import > X3D & VRML97" as shown below:

[[Image:Scr06.png|center|350px]]

* '''Step 6'''
Navigate to the folder where you exported the VRML 2 files from PyMOL and select the "3IQS_cartoon" file:

[[Image:Scr07.png|center|350px]]

Click the "Import X3D/VRML97" button after selecting the correct file and just click "OK" if a dialog comes up.

* '''Step 8'''
Doing the above should result in a display such as the one below:

[[Image:Scr08.png|center|350px]]