It would be nice to add the load_b parameter to the docs. It appears to me that load_b assigns a b-value to each atom based on the area computation.
Also, a brief explanation of the state parameter would be helpful.
How does that sound? Thanks!
--Seth ro18 17:19, 2 November 2009 (UTC)
Seth, thanks. Added some info. Tree 13:25, 4 November 2009 (UTC)
v2.5 flag ignore updates
I've updated the CLI examples so that they should behave consistently since the v2.5 update to the treatment of flag ignore. Basically, flag ignore does what it should, but the previously magically ignored solvent molecules are now no longer magically ignored so need to be specifically excluded.
I haven't fixed the script example yet for per-residue SASA, but I suspect that it also needs a "flag ignore, solvent" adding.