Difference between revisions of "Talk:TOPTOC"
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+ | == Notes == | ||
+ | Each major link should link to a category page. Then, each category page should have a short intro and the auto-generated out-going links to each of its pages. This way, we get coverage with minimal effort. | ||
+ | |||
== New Table == | == New Table == | ||
+ | Here's the code for a new table for this page. This page is quite popular and needs to be cleaned up...alot. Feel free to make changes to the main TOPTOC as needed. | ||
− | + | {| style="border: align:center; width:100%; background:#E5DBCF; border: 3px solid #333;" | |
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− | {| style="border: align:center; width:100%; background:#E5DBCF; border: | ||
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− | | align="left" | | + | | align="left" valign="top" | |
− | {| style=" | + | {| style="color:#CC9752; padding: 10px; background: transparent;" |
− | ! style="background:transparent; font-size: 150%; text-decoration:underline; text-align: | + | ! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left;" colspan="2" | Installation, Configuration & Learning |
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| style="background:transparent; color: #333; width:50%; font-weight: normal; font-size:100%; text-align:left; vertical-align:top;"| | | style="background:transparent; color: #333; width:50%; font-weight: normal; font-size:100%; text-align:left; vertical-align:top;"| | ||
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# '''[[:Category:Stereo 3D Display|Stereo 3D Display]]''' | # '''[[:Category:Stereo 3D Display|Stereo 3D Display]]''' | ||
## [[Linux XFree86 Configuration]] | ## [[Linux XFree86 Configuration]] | ||
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+ | [[Image:0903_1_1.jpg|center|85px]] | ||
| style="background:transparent; color: #333; width:50%; font-weight: normal; font-size:100%; text-align:left; vertical-align:top;"| | | style="background:transparent; color: #333; width:50%; font-weight: normal; font-size:100%; text-align:left; vertical-align:top;"| | ||
# '''[[:Category:Using Pymol|Using PyMol]]''' | # '''[[:Category:Using Pymol|Using PyMol]]''' | ||
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#### [[Selection Macros|Selection Macros]] | #### [[Selection Macros|Selection Macros]] | ||
|} | |} | ||
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− | {| style=" | + | {| style="color:#CC9752; padding: 10px; background: transparent;" |
− | ! | + | !style="background:transparent; font-size: 150%; text-decoration:underline; vertical-align:top; text-align:left;" colspan="2" | Commands, Representations & Settings |
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| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"| | | style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"| | ||
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# '''[[:Category:Settings|Settings (Documented)]]''' | # '''[[:Category:Settings|Settings (Documented)]]''' | ||
## [[Settings|All]] | ## [[Settings|All]] | ||
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+ | [[Image:050429science.pdf.jpg|85px|center]] | ||
| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"| | | style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"| | ||
# '''[[:Category:Representations|Representations]]''' | # '''[[:Category:Representations|Representations]]''' | ||
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|} | |} | ||
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− | {| style=" | + | {| style="color:#CC9752; padding: 10px; background: transparent;" |
− | ! style="background:transparent; font-size: 150%; text-decoration:underline; text-align: | + | ! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left;" colspan="2" | Physico-chemical Modeling |
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| style="background:transparent; color: #333; width:50%; font-weight: normal; font-size:100%; text-align:left; vertical-align:top;"| | | style="background:transparent; color: #333; width:50%; font-weight: normal; font-size:100%; text-align:left; vertical-align:top;"| | ||
# '''[[:Category:Biochemical_Properties|Biochemical Properties]]''' | # '''[[:Category:Biochemical_Properties|Biochemical Properties]]''' | ||
## [[Displaying Biochemical Properties|Displaying biochemical properties]] | ## [[Displaying Biochemical Properties|Displaying biochemical properties]] | ||
+ | ## [[Surfaces_and_Voids|Surfaces and Voids]] | ||
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+ | [[Image:Ribbon_hh1.png|center|85px]] | ||
| style="background:transparent; color: #333; width:50%; font-weight: normal; font-size:100%; text-align:left; vertical-align:top;"| | | style="background:transparent; color: #333; width:50%; font-weight: normal; font-size:100%; text-align:left; vertical-align:top;"| | ||
# [[Modeling_and_Editing_Structures|Modeling and editing structures]] | # [[Modeling_and_Editing_Structures|Modeling and editing structures]] | ||
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## [[Molecular Sculpting|Molecular sculpting]] | ## [[Molecular Sculpting|Molecular sculpting]] | ||
## [[Homology Modeling|Homology modeling]] | ## [[Homology Modeling|Homology modeling]] | ||
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|} | |} | ||
− | | align=" | + | | align="left" valign="top" | |
− | {| style=" | + | {| style="color:#CC9752; padding: 10px; background: transparent;" |
− | ! | + | ! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left; vertical-align:top;" colspan="2" | Images & Movies |
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| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"| | | style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"| | ||
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# [[Making_Movies|Making Movies]] | # [[Making_Movies|Making Movies]] | ||
## [[Software_Codecs|Codecs]] | ## [[Software_Codecs|Codecs]] | ||
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+ | [[Image:070816nature.pdf.jpg|center|85px]] | ||
|} | |} | ||
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− | | align=" | + | | align="left" valign="top" | |
− | {| style=" | + | {| style="color:#CC9752; padding: 10px; background: transparent;" |
− | ! | + | ! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left;" colspan="2" | Extending, Embedding & Scripting |
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− | | style="background:transparent; color: #333; | + | | style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"| |
− | | style="background:transparent; color: #333; | + | # [[Scripting|Scripting]] |
+ | ## [[Example Scripts|Example Scripts]] | ||
+ | ## '''[[:Category:Script Library|Script Library]]''' | ||
+ | # '''[[:Category:Plugins|Plugins]]''' | ||
+ | ## '''[[:Category:Electrostatics|Electrostatics and energy minimization.]]''' | ||
+ | ### [[APBS|APBS Plugin]] | ||
+ | ### [[Protein_contact_potential]] | ||
+ | ## [http://www.rubor.de/bioinf/pymol_extensions.html rtools] | ||
+ | ## [[Plugins_Tutorial|Tutorial on writing plugins]] | ||
+ | ## '''[[:Category:Plugins Others| Others]]''' | ||
+ | | | ||
+ | | style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"| | ||
+ | # High-Level Applications | ||
+ | ## Crystallography Applications | ||
+ | ### Symmetry|Symmetry | ||
+ | ### Electron Density | ||
+ | ## NMR Applications | ||
+ | ### Working with Structure Families | ||
+ | ## '''[[:Category:Structure_Alignment|Superimposition and RMSD]]''' | ||
+ | ### NMR Restraints and Analysis | ||
|} | |} | ||
− | | align=" | + | | align="left" valign="top" | |
− | {| style=" | + | {| style="color:#CC9752; padding: 10px; background: transparent;" |
− | ! | + | ! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left; vertical-align:top;" colspan="2"| Third Party Applications |
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− | | style="background:transparent; color: #333; | + | | style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"| |
− | | style="background:transparent; color: #333; | + | # [[O]] |
+ | # [[SURFNET]] | ||
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+ | [[Image:080602cnen.pdf.jpg|center|85px]] | ||
+ | | | ||
+ | | style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"| | ||
+ | # [[Python_Integration|Python Integration]] | ||
+ | # '''[[:Category:PyMol_Integration|PyMol_Integration]]''' | ||
+ | ## [[Nuccyl|Nuccyl]] -- Nuccyl is a great PyMol extension | ||
+ | ## [[CASTp|CASTp]] -- Binding and Active site prediction | ||
+ | ## [[CCTBX|CCTBX]] -- Computational Crystallography Toolbox | ||
+ | ## [[ProMOL]] | ||
+ | ## [[S2S]] | ||
+ | ## '''[[:Category:PyMol_Integration Arbitrary_Graphics_Objects|Arbitrary_Graphics_Objects]]''' | ||
|} | |} | ||
|} | |} |
Latest revision as of 12:17, 15 September 2008
Notes
Each major link should link to a category page. Then, each category page should have a short intro and the auto-generated out-going links to each of its pages. This way, we get coverage with minimal effort.
New Table
Here's the code for a new table for this page. This page is quite popular and needs to be cleaned up...alot. Feel free to make changes to the main TOPTOC as needed.
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