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PyMol Wiki Home

You have reached the home of the PyMolWiki, a user-driven web-oriented CMS.

We provide

  • updates on PyMol
  • a stable user-oriented documentation base
  • a thorough treatment of the PyMol program
  • feature-rich scripts for general PyMol use

New Users

Welcome! New users who wish to contribute appropriate content are welcome to join. Feel free to add any appropriate content; make an account and get started!

News

PyMol

  • CE Align v0.7 released. Better than before. See test case comparisons.
  • Slerpy, a set of pymol command extensions to simplify complex movie making is now available.
  • Updated the Kabsch code with a more elegant solution; fixed a small rotation bug.
  • Pymol 0.99 is out! Get it here.
  • A new version of APBS plugin is available on Michael Lerner's Page.
  • New Beta Releases available.
  • New cool ray tracing features added!

Wiki

  • Added useful mini-script for re-assigning the B Factor column to something new and coloring it.
  • captcha system installed.
  • If you notice something out of the ordinary, please contact the admin. I updated some software.
  • Settings now contains documentation on:
              - helix roundness
              - ribbon sampling
              - cartoon sampling
              - cartoon highlight coloring
              - cartoon color blending vs discrete colors
              - and more!  now 48 documented (with examples); just 470 to go....
  • SURFNET information on reading surfaces from other programs added.
  • Two new Plugins have been added, NsSNP Loader and Proxy Config.
  • Added a page that lists all PyMol settings. We need to start documenting these.
  • MAC_Install page has been developed. It describes pymol and apbs issues specific to Mac OS X.
  • APBS page has been established.
  • APBS How to set this up on OS X and on Linux has been started but needs contributions.
    • Added info on installing APBS from source

News Archive

Links of Interest