Difference between revisions of "Main Page"

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Revision as of 23:16, 2 January 2016

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Color cbcobj

Type Python Script
Download
Author(s) Oscar Conchillo-Solé
License

Overview

color_cbcobj

Color all chains in different objects with a different color

color_cbcobj(selection='(all)', first_color=0, quiet=0, _self=cmd):

uses colors and order as in _color_cycle defined here: https://github.com/schrodinger/pymol-open-source/blob/master/modules/pymol/util.py

quiet=0 means verbose (not quiet)

Usage

color_cbcobj selection, [first_color=0..n, [quiet=0/1 ]]

where:

  • selection can be any existing or newly-defined selection
  • first_color first color tu use from "_color_cycle" (first is 0)
  • quiet (default 0) print colored chains and models quiet=0 means verbose (not quiet)

Examples

PyMOL>color_cbcobj all and elem C,2,1

colors all chains in all objects differently, only carbon atoms, starting by color 154 (lightmagenta), does not show what has been colored

<source lang="python"> PyMOL>color_cbcobj ..→

A Random PyMOL-generated Cover. See Covers.


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